BAC Information

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BAC

Clone NameMSMg01-078O11
Chromosome5 (Build37)
Map Location 14,338,096 - 14,338,581
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078O11.T7 (MSMg01no078_o11.b1)MSMg01-078O11.TJ (MSMg01no078_o11.g1)
ACCAG300124AG300125
length711718
length of high quality
(start - end)
473 (41 - 513)486 (74 - 559)
definitionCHROMAT_FILE: MSMg01no078_o11.b1 PHD_FILE: MSMg01no078_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:22 2005CHROMAT_FILE: MSMg01no078_o11.g1 PHD_FILE: MSMg01no078_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAACTCTAACCCAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATAC
CGCTTAACATCAATGGACTCAATTCTCCAATAAAAAGACATAGATTAACA
GACTGGTTACTTAAACAGGACCTAAAATTTTGCTACATACAGGAAACATA
CCTCAGTGACAAAGACAGACACTACCTTAGAATAAAAGGCTGGAAAATAA
TTTTCCAGGGAGATGGTCCCAAGAAACAAGCTTGAGTCGCCATGCTAATA
TTGAATAAAGTAGATTTTCAACTCAAAGTTATCAAAGGTAAAATCTACCA
AGATGAACTCTCTATTCTGAACATCTATGCTCCAAATGCAAGGGCATCCA
CATTCTGAAAAGACACTTTACTAAAGCTCAAAGCACACATTGCACAGCAC
ACAACAATAATAGAAGACTTCAAAACCCCACTCTCATCAATGGACAGATC
CTGGAAGCAGAAACTAAACAGATACACAGTGAAACTAACTGAAGTTATGA
AACAAATGGATTTAGCAGATATCTATACAGTATTTTATCCTAAAACAAAA
GGATATGCCTTCTTCTCATCACCTCATAGTACCTTGTCCAAAATTGACCA
TATAATCAGTCACAAAACAGGCCTCATCAGATACTAGAGGGTTTAAATAA
CCCCATGCATC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAAGGTAGAAAACCAAAACCCAAACCA
ACCAACCAAAAAAACAAACAAACAAAACCAAAACAAAACCCTTGTACCAT
CCTCATGAATCAGGAACAGGACTACATTCCCTATTACAGTTAGAGCAAAA
TGCAGTTAACCAAAAAAGATGGGTGGACACCTTGTGTTGAGTCTTCACCT
TCCTTCCCTTGCCACTCATCTACCATGATAACTTCTACAGGAAGATAGGA
GGCACACTTAGTTATGTGTATCTTAAAAGTAAATGCCAGCAAACCAAGAT
ACAGCAGATTATAAACAGAATGAATTTTAGTGCTTGAAGTATCTTTATGT
GGAAATAATGTAAGGTTAACATCCCAAAAGATTAAAAATAAACACTGAAA
TTATGTTAATATAATTTGCCATACTATGAGATTAAAATTAATTATGTAAT
TAACATAAATTGTAGCATGCACACACAAAACCAACACCTGAAAATCAGAA
CAAGCAAGCTAAGGAACAGAAAGAGGAAAAACTTTCAAACAAAAAGTTCA
CATAACACATAACACACACCACAGATACCAAACATAACATAAGCCAAATA
ATACTACATACAACAAATTTCTGCTGTTCATTTTGTGTTGCGCAGCTACT
CCTGGCCTGCCTTGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_o11.g1 MSMg01no078_o11.g1 CHROMAT_FILE:
MSMg01no078_o11.g1 PHD_FILE: MSMg01no078_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:22 2005
         (486 letters)



>mm_chr5_14337896_14338781
          Length = 886

 Score =  824 bits (426), Expect = 0.0
 Identities = 471/486 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaggtagaaaaccaaaacccaaaccaaccaaccaaaaaaacaaacaaacaaaaccaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 taaggtagaaaaccaaaacccaaaccaaccaaccaaaaaaacaaacaaacaaaaacaaaa 260

                                                                       
Query: 61  caaaacccttgtaccatcctcatgaatcaggaacaggactacattccctattacagttag 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 261 caaaacccttgtaccatcctcatgagtcaggaacaggactacattccctcttacagttag 320

                                                                       
Query: 121 agcaaaatgcagttaaccaaaaaagatgggtggacaccttgtgttgagtcttcaccttcc 180
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 agcaaaatgcacttaaccaaaaaagatgggtggacgccttgtgttgagtcttcaccttcc 380

                                                                       
Query: 181 ttcccttgccactcatctaccatgataacttctacaggaagataggaggcacacttagtt 240
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 381 ttcccttgccactcatctaccatgctaacttctacaggaagataagaggcacacttagtt 440

                                                                       
Query: 241 atgtgtatcttaaaagtaaatgccagcaaaccaagatacagcagattataaacagaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgtatcttaaaagtaaatgccagcaaaccaagatacagcagattataaacagaatga 500

                                                                       
Query: 301 attttagtgcttgaagtatctttatgtggaaataatgtaaggttaacatcccaaaagatt 360
           | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 actttagtgcttgaagtatctttatgtggaaataatgtaaggttagcatcccaaaagatt 560

                                                                       
Query: 361 aaaaataaacactgaaattatgttaatataatttgccatactatgagattaaaattaatt 420
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 561 aaaaataaacactgaaattatgttaatataattcgtcatactatgagattaaaattaatt 620

                                                                       
Query: 421 atgtaattaacataaattgtagcatgcacacacaaaaccaacacctgaaaatcagaacaa 480
           | |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 acgtaattaaaataaattgtagcatgcacacacaaaaccaaaacctgaaaatcagaacaa 680

                 
Query: 481 gcaagc 486
            |||||
Sbjct: 681 acaagc 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)