Query= MSMg01no079_b19.b1 MSMg01no079_b19.b1 CHROMAT_FILE:
MSMg01no079_b19.b1 PHD_FILE: MSMg01no079_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:38 2005
(679 letters)
>mm_chr5_29650920_29651997
Length = 1078
Score = 1207 bits (624), Expect = 0.0
Identities = 664/680 (97%), Gaps = 8/680 (1%)
Strand = Plus / Plus
Query: 7 gaattcc-agtgagaaa-acactgtgacccaggtgggcaagctcacagagccatttccct 64
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattccaagtgagaaagaaactgtgacccaggtgggcaagctcacagagccatttccct 259
Query: 65 tttggccaagttatgacacaatagatgacaacaaaaataaggtacacggtcaggtatgtc 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 260 tttggccaagttatgacacaatagatgacaacaaaaataaggtatacggtcaggtatgtc 319
Query: 125 acaggcagagtgtttgacccaacacctattttttaaaatagaaaacacacaaacaccagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acaggcagagtgtttgacccaacacctattttttaaaatagaaaacacacaaacaccagg 379
Query: 185 cagtggtggacagtggtggcgcatgcttttaatcccagcacttcggagggagaggcaggc 244
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 cagtggtgggcagtggtggcgcatgcttttaatcccagcacttcggaggcagaggcaggc 439
Query: 245 ggatttctgagttcgaggccagc-----ttggactacagagtgagttcccagacagccag 299
||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 440 ggatttctgagttcgaggccagcctgaattaaactacagagtgagttcccagacagccag 499
Query: 300 ggctacaagtgtgcaagccagaagaatatgttgtgtaacgattcatggagacagcaatat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 ggctacaagtgtgcaagccagaagaatatgttgtgtaacgattcatggagacagcaa-at 558
Query: 360 tccattacaaaaggaattgagctaaagatgtgtactatagccttcaaaatgtctaataaa 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tccattacaaaaggaattgagttaaagatgtgtactatagccttcaaaatgtctaataaa 618
Query: 420 actggcagtattctgtatatttaaatcaaatgaagaaattcacatgaattatacttaaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actggcagtattctgtatatttaaatcaaatgaagaaattcacatgaattatacttaaaa 678
Query: 480 ctgtatttgacaaactgagccactaagacagcatgttctttatcctataaatttgcctac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgtatttgacaaactgagccactaagacagcatgttctttatcctataaatttgcctac 738
Query: 540 agatgttaagtttgcttctatgatccagtattcataattcttatcaaatgctcgtttcat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agatgttaagtttgcttctatgatccagtattcataattcttatcaaatgctcgtttcat 798
Query: 600 gtttcaggatagttactgactatgagtcccttgtgcttttgtcaacatcactttcctcat 659
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gtttcaggatagtaactgactatgagtcccttgtgcttttgtcaacatcactttcctcat 858
Query: 660 tgtcctttaaataaatgatt 679
||||||||||||||||||||
Sbjct: 859 tgtcctttaaataaatgatt 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1078
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1068
Effective search space: 714492
Effective search space used: 714492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_b19.g1 MSMg01no079_b19.g1 CHROMAT_FILE:
MSMg01no079_b19.g1 PHD_FILE: MSMg01no079_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:38 2005
(549 letters)
>mm_chr5_29829743_29830691
Length = 949
Score = 652 bits (337), Expect = 0.0
Identities = 370/381 (97%), Gaps = 1/381 (0%)
Strand = Plus / Minus
Query: 161 ccaaccctgtgtagaatgaggccctcctcttggctcccttcagattaaggtggagaacac 220
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 949 ccaaccctgtgtagaatgaggccctcctcttggctcccttctgattaaggtggaaaacac 890
Query: 221 tcagttcctcctccagcaccacgtcagtctgcatgccaccacacttcctg-catgacgat 279
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct: 889 tcagttcctcctccagcaccatgtcagtctgcatgccaccacacttcttgccatgacgat 830
Query: 280 aatggactgaacctttgaaactgaaagccagccccaattaaatgtttgcctttataagag 339
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aacggactgaacctttgaaactgaaagccagccccaattaaatgtttgcctttataagag 770
Query: 340 ttgcctcgcccatggtatctcttcacagcagtaaaaccctaagacagctggcatgggata 399
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ttgccttggtcatggtatctcttcacagcagtaaaaccctaagacagctggcatgggata 710
Query: 400 aacacatgtcaatgggacaagcctcacttgcatagtcaatatgttttaacaggccaacac 459
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 709 aacacatgtcaatgggacaagcctcacttgcatagtcaatatgtttttacaggccaacac 650
Query: 460 tgaagggatggtctgctctaaacagactcaagaacaacagaatatccattggaaaaagat 519
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 649 tgaagggatggtctgctctaaacagacacaagaacaacagaatatccattggaaaaagat 590
Query: 520 agctcttgtgttgttgttgtt 540
|||||||||||||||||||||
Sbjct: 589 agctcttgtgttgttgttgtt 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
