BAC Information

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BAC

Clone NameMSMg01-079E21
Chromosome5 (Build37)
Map Location 135,095,872 - 135,248,540
singlet/doubletdoublet
Overlap geneEif4h, LOC638081, Limk1, Eln
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2
Downstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079E21.T7 (MSMg01no079_e21.b1)MSMg01-079E21.TJ (MSMg01no079_e21.g1)
ACCAG300415AG300416
length708703
length of high quality
(start - end)
333 (37 - 369)144 (90 - 233)
definitionCHROMAT_FILE: MSMg01no079_e21.b1 PHD_FILE: MSMg01no079_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:54 2005CHROMAT_FILE: MSMg01no079_e21.g1 PHD_FILE: MSMg01no079_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,248,217 - 135,248,540)(135,095,872 - 135,096,015)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATAGAGGATCCGCGGAATT
CTCGCCCTCGCCTGGGTGGAGTGGGATTCGGCTCGTGGCCCAAATGGCTG
GGGAGGGTGGGCCTGGACTGGAAGTGGAGGGAACCCGTTCAGGCCTAAAG
GAATAGCAAGGTCTGGACTGGCATTTCCTCCTGGGGTGGAGAGTTCTTGG
ATGGGAGTGGGACCAGGTCAGATACCTGGAAGGGGACTAATCACAGAGAA
TTTACCTTTGACCTTTGGTGGTTCCACGCTGGAATCCAGGGCTAAGGATT
TGATCTTGACAACCTGTCCCTCACTCTAGACCAAGATTTCTCTGATTCCT
AGTTAAGCTATTTCTGTCTTATGGGGTAGGGAATGTAACTCATGCCTTCT
CTTATGCCCCCCACCCTTACTCTGAACTACACCCAAAGCCCCTCACTGGG
GGATTCTAGGCAGGTGCTCTACCTCTGATCTCACGCTCCCAGCCCCTCAC
TGGGGGATTCTAGGCAGGGTTTCTATCACTGATCCATACTCCCTTGTCTC
TTCATTAGGGAATCTAGGCAGGTACTGTTACTATAATTTTCATCTCCTGT
CTCCCTTTACTTTTTCTAAGATACCCAGGCTGGCCACGAACTTCCTTTTT
GTTTGATCTAGGCCATGACTTTATCATTGCTCTTTTTTCTCAAGTATCTA
GTATTCCA
AATGTGGTAGGCCGGGNGGCGCCATTCCGACCCGGGTAGGNGAACTATAG
ATTTCCCGAGCAATTCCATTCTTACAGNCAGCTGGGGGCCCAGCAATGGG
GATGGACGGGCCTGTCTTTTCCGCATTGGAGATGGATTACATCATCTGAA
AGCATCAGCTTTGATTACAACCACGCAATGCATGTCTGTCTTAAGTTAGG
TATTGGTGTTACACAAATGGTTCTTATCTCAGAAGCAGAGATTTTGTCAG
GCGAGGGAAGGAGTGAGAGTTCTGTAAATTGCCGAGACCTTGCAACAAAG
ACAATCTTTTAATCAATGTGCAGGCTGGCAGGAAGCTGCTGGCTACTATT
TTTTCTCCCCACCTCTCACCCCCTTTCCCCAAGGATCTAGTGTCTGGCTG
ACCCCTACTGCTCCAATTGTAGCATACGGAGACTGGGTGCCAATCCTTTT
CCATTGTTCACACACAGCTGTTCAAGCCATAAGCCAATCCTGATTGATCC
CCTTTGCTCTCTCTCAAGTGAGTGCTCCACACTGTCAGCGGTAGCAGGGG
TCTGCCTCACTTATGAAGCAGCACACCTTATAGGTTTCTTTACTCCTATG
AACTGATGGTCTCACCATCTTGTTTAACTGTATTCAAATAGTGCCTTATT
TTTTTTTTTTTAACTTGTAGCGCCGAGCTTTCCTTTGTTTTAATTGTCCT
GTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_e21.b1 MSMg01no079_e21.b1 CHROMAT_FILE:
MSMg01no079_e21.b1 PHD_FILE: MSMg01no079_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:54 2005
         (333 letters)



>mm_chr5_135248010_135248742
          Length = 733

 Score =  596 bits (308), Expect = e-175
 Identities = 320/324 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   cggaattctcgccctcgcctgggtggagtgggattcggctcgtggcccaaatggctgggg 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cggaattctcgccctggcctgggtggagtgggattcggctcgtggcccaaatggctgggg 472

                                                                       
Query: 68  agggtgggcctggactggaagtggagggaacccgttcaggcctaaaggaatagcaaggtc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agggtgggcctggactggaagtggagggaacccgttcaggcctaaaggaatagcaaggtc 412

                                                                       
Query: 128 tggactggcatttcctcctggggtggagagttcttggatgggagtgggaccaggtcagat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tggactggcatttcctcctggggtggagagttcttggatgggagtgggaccaggtcagat 352

                                                                       
Query: 188 acctggaaggggactaatcacagagaatttacctttgacctttggtggttccacgctgga 247
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 351 acctggaaggggactaatcacagagaatttacctttgacctttggtggctccacgctgga 292

                                                                       
Query: 248 atccagggctaaggatttgatcttgacaacctgtccctcactctagaccaagatttctct 307
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atccagggttaaggatttgatcttgacaacctgtccctcactctagaccaagatttctct 232

                                   
Query: 308 gattcctagttaagctatttctgt 331
           |||||||||||||| |||||||||
Sbjct: 231 gattcctagttaagttatttctgt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no079_e21.g1 MSMg01no079_e21.g1 CHROMAT_FILE:
MSMg01no079_e21.g1 PHD_FILE: MSMg01no079_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:54 2005
         (144 letters)



>mm_chr5_135095672_135096215
          Length = 544

 Score =  271 bits (140), Expect = 1e-77
 Identities = 143/144 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagcaatggggatggacgggcctgtcttttccgcattggagatggattacatcatctga 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagcaatgtggatggacgggcctgtcttttccgcattggagatggattacatcatctga 260

                                                                       
Query: 61  aagcatcagctttgattacaaccacgcaatgcatgtctgtcttaagttaggtattggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcatcagctttgattacaaccacgcaatgcatgtctgtcttaagttaggtattggtgt 320

                                   
Query: 121 tacacaaatggttcttatctcaga 144
           ||||||||||||||||||||||||
Sbjct: 321 tacacaaatggttcttatctcaga 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)