BAC Information

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BAC

Clone NameMSMg01-079F17
Chromosome5 (Build37)
Map Location 135,095,849 - 135,248,513
singlet/doubletdoublet
Overlap geneEif4h, LOC638081, Limk1, Eln
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2
Downstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079F17.T7 (MSMg01no079_f17.b1)MSMg01-079F17.TJ (MSMg01no079_f17.g1)
ACCAG300455AG300456
length720720
length of high quality
(start - end)
478 (66 - 543)525 (66 - 590)
definitionCHROMAT_FILE: MSMg01no079_f17.b1 PHD_FILE: MSMg01no079_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:58 2005CHROMAT_FILE: MSMg01no079_f17.g1 PHD_FILE: MSMg01no079_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,248,036 - 135,248,513)(135,095,849 - 135,096,373)
sequence
TTGCGGCCGCTAAACGACTCCTANATGCTGAGGATGCGCGGAATTCTCGC
CCTGTTCTGAAAGGAGTGGGATTCGGCTCGTGGCCCAAATGGCTGGGGAG
GGTGGGCCTGGACTGGAAGTGGAGGGAACCCGTTCAGGCCTAAAGGAATA
GCAAGGTCTGGACTGGCATTTCCTCCTGGGGTGGAGAGTTCTTGGATGGG
AGTGGGACCAGGTCAGATACCTGGAAGGGGACTAATCACAGAGAATTTAC
CTTTGACCTTTGGTGGCTCCACGCTGGAATCCAGGGTTAAGGATTTGATC
TTGACAACCTGTCTTTCTCTCTAGACCAAGATTTCTCTGATTCCTAGTTA
AGTTATTTCTGTTTTATGGGGTAGGGAATGGAACTCAGGGCTTCTCACAT
GCTAGGCTCTTACTCTGAACTACACCCAAAGCCCCTCACTGGGGGATTCT
AGGCAGGGGCTCTACCACTGAGCCACGTCCCCAGCCCCTCACTGGGGGAT
TCTAGGCAGGGGCTCTACCACTGAGCCACACCCCCAGCCCCTCATTAGGG
AATCTAGGCAGGTACTGTACCTATAAGCTACCTCTCCAGCCATCCTTTAC
CTTTTCTAAGTTTCCCAGGCTGGCCTTGAACTCTCTCCATGGTTGAGCCT
GGCCTTGAGCTTTTCTTGCCCAGCCTCCCCAGTATTCAGGATACCAGGCT
GATGTCTAGACAACCTCTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATTCTTACAGTCAGCTGGGTGCCCAGCAATGTGG
ATGGACGGGCCTGTCTTTTCCGCATTGGAGATGGATTACATCATCTGAAA
GCATCAGCTTTGATTACAACCACGCAATGCATGTCTGTCTTAAGTTAGGT
ATTGGTGTTACACAAATGGTTCTTATCTCAGAAGCAGAGAAGATGGCAGG
CGAGGGAAGGAGTGAGAGTTCTGTAAATTGCCGAGACCTTGCAACAAAGA
CAATCCCGAGCCAAGGTTTAGGCTGGCAGGAAGCTGCTGGCTACCAAGCA
AGCTGCACACCTCTCAGCCCCTTTCCCCAAGGCTCTAGTGGCTGGCTGAC
CCCTACTGCTCCAATTGGAGCAGACGGAGACTGGGTGCCAATCCTTTTCC
ATTGTTCACACACAGCTGTTCAAGCCAAAAGCCAAACCTGGTTGATCCCC
TTTGCTCTCTCTCAAGTGAGTGCTCCACACTGTCTGCGGGAGCAGGGGTC
TGCCCCACAGAGGAAGCAGCACACCTAGAGGTTTCTAGACACCTAGGTAC
TGAGGGTCTCAACAGCTGGCTAACTGATCAGAGAAAGTGCCAGACTCTAG
GCCTTGAGCTGCGGTGGCGAGCAGCCTTCTGGGCTAAGCGCCCTGGATCA
GACAGACTCATGTAAAGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_f17.b1 MSMg01no079_f17.b1 CHROMAT_FILE:
MSMg01no079_f17.b1 PHD_FILE: MSMg01no079_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:58 2005
         (478 letters)



>mm_chr5_135248019_135248896
          Length = 878

 Score =  893 bits (462), Expect = 0.0
 Identities = 474/478 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgggattcggctcgtggcccaaatggctggggagggtgggcctggactggaagtggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gtgggattcggctcgtggcccaaatggctggggagggtgggcctggactggaagtggagg 436

                                                                       
Query: 61  gaacccgttcaggcctaaaggaatagcaaggtctggactggcatttcctcctggggtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gaacccgttcaggcctaaaggaatagcaaggtctggactggcatttcctcctggggtgga 376

                                                                       
Query: 121 gagttcttggatgggagtgggaccaggtcagatacctggaaggggactaatcacagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gagttcttggatgggagtgggaccaggtcagatacctggaaggggactaatcacagagaa 316

                                                                       
Query: 181 tttacctttgacctttggtggctccacgctggaatccagggttaaggatttgatcttgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttacctttgacctttggtggctccacgctggaatccagggttaaggatttgatcttgac 256

                                                                       
Query: 241 aacctgtctttctctctagaccaagatttctctgattcctagttaagttatttctgtttt 300
           ||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aacctgtccctcactctagaccaagatttctctgattcctagttaagttatttctgtttt 196

                                                                       
Query: 301 atggggtagggaatggaactcagggcttctcacatgctaggctcttactctgaactacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 atggggtagggaatggaactcagggcttctcacatgctaggctcttactctgaactacac 136

                                                                       
Query: 361 ccaaagcccctcactgggggattctaggcaggggctctaccactgagccacgtccccagc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 135 ccaaagcccctcactgggggattctaggcaggggctctaccactgagccacgcccccagc 76

                                                                     
Query: 421 ccctcactgggggattctaggcaggggctctaccactgagccacacccccagcccctc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  ccctcactgggggattctaggcaggggctctaccactgagccacacccccagcccctc 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no079_f17.g1 MSMg01no079_f17.g1 CHROMAT_FILE:
MSMg01no079_f17.g1 PHD_FILE: MSMg01no079_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:58 2005
         (525 letters)



>mm_chr5_135095649_135096573
          Length = 925

 Score =  984 bits (509), Expect = 0.0
 Identities = 521/525 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcttacagtcagctgggtgcccagcaatgtggatggacgggcctgtcttttccgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcttacagtcagctgggtgcccagcaatgtggatggacgggcctgtcttttccgcat 260

                                                                       
Query: 61  tggagatggattacatcatctgaaagcatcagctttgattacaaccacgcaatgcatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggagatggattacatcatctgaaagcatcagctttgattacaaccacgcaatgcatgtc 320

                                                                       
Query: 121 tgtcttaagttaggtattggtgttacacaaatggttcttatctcagaagcagagaagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcttaagttaggtattggtgttacacaaatggttcttatctcagaagcagagaagatg 380

                                                                       
Query: 181 gcaggcgagggaaggagtgagagttctgtaaattgccgagaccttgcaacaaagacaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggcgagggaaggagtgagagttctgtaaattgccgagaccttgcaacaaagacaatc 440

                                                                       
Query: 241 ccgagccaaggtttaggctggcaggaagctgctggctaccaagcaagctgcacacctctc 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgagccaaggggtaggctggcaggaagctgctggctaccaagcaagctgcacacctctc 500

                                                                       
Query: 301 agcccctttccccaaggctctagtggctggctgacccctactgctccaattggagcagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcccctttccccaaggctctagtggctggctgacccctactgctccaattggagcagac 560

                                                                       
Query: 361 ggagactgggtgccaatccttttccattgttcacacacagctgttcaagccaaaagccaa 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 ggagactgggtgccaatccttttccattgttcacacacaactgttcaagccaaaagccaa 620

                                                                       
Query: 421 acctggttgatcccctttgctctctctcaagtgagtgctccacactgtctgcgggagcag 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 acctggttgatcccctttgctctctctcaagtgagtgctccatactgtctgcgggagcag 680

                                                        
Query: 481 gggtctgccccacagaggaagcagcacacctagaggtttctagac 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggtctgccccacagaggaagcagcacacctagaggtttctagac 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)