Query= MSMg01no079_h14.b1 MSMg01no079_h14.b1 CHROMAT_FILE:
MSMg01no079_h14.b1 PHD_FILE: MSMg01no079_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:07 2005
(239 letters)
>mm_chr5_118166115_118166753
Length = 639
Score = 437 bits (226), Expect = e-127
Identities = 235/238 (98%)
Strand = Plus / Plus
Query: 1 gaggaaacataatgagatgctaatagtgtgatagtaatgcagaacagtgactcgaggaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggaaacataatgagatgctaatagtgtgatagtaatgcagaacagtgactcgaggaca 260
Query: 61 cttgccccaaacatccatcatacacagatctatgtgcttgaagctgggacttctgagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgccccaaacatccatcatacacagatctatgtgcttgaagctgggacttctgagaag 320
Query: 121 atgatccgtgctctcgtgggctcataggtgccattcactgacagagttccctgcatcatt 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 atgatccgtgctctcgtgggctcataggtgccattcactgacagagacccctgcatcatt 380
Query: 181 atgatctatgccatgacccagagctagcccatgattcaaccaagtaactgccaaatgg 238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 atgatctatgccatgacccagagctagcccgtgattcaaccaagtaactgccaaatgg 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no079_h14.g1 MSMg01no079_h14.g1 CHROMAT_FILE:
MSMg01no079_h14.g1 PHD_FILE: MSMg01no079_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:07 2005
(310 letters)
>mm_chr5_118313266_118313974
Length = 709
Score = 582 bits (301), Expect = e-171
Identities = 307/309 (99%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 1 aactgacagaggcctggcacgctcagaaaaactggtctctggttattattatgtaacatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aactgacagaggcctggcacgctcagaaaaactggtctctggttattattatgtaacatg 449
Query: 61 atgatttgggcctcctgggttttaatcagcatgtgggttttttttcccccctgttctatc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 448 atgatttgggcctcctgggttttaatcagcatgtggg-tttttttcccccctgttctatc 390
Query: 121 agtgtctttttgtgtcagtctctaaggggaccctcccctgcagatgactctgaggattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agtgtctttttgtgtcagtctctaaggggaccctcccctgcagatgactctgaggattct 330
Query: 181 ggtcactgtgaaatcactgtcttcagggagataaaagctaggctgaatggcctgtcagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggtcactgtgaaatcactgtcttcagggagataaaagctaggctgaatggcctgtcagtt 270
Query: 241 tgtctctacactctggagctgaggttcccaacaaattatgcttgcatacgcacgcacaca 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtctctacactctggagctgagattcccaacaaattatgcttgcatacgcacgcacaca 210
Query: 301 ggcacacac 309
|||||||||
Sbjct: 209 ggcacacac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 709
Length adjustment: 9
Effective length of query: 301
Effective length of database: 700
Effective search space: 210700
Effective search space used: 210700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
