Query= MSMg01no079_j08.b1 MSMg01no079_j08.b1 CHROMAT_FILE:
MSMg01no079_j08.b1 PHD_FILE: MSMg01no079_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:15 2005
(471 letters)
>mm_chr5_104309897_104310767
Length = 871
Score = 880 bits (455), Expect = 0.0
Identities = 467/471 (99%), Gaps = 1/471 (0%)
Strand = Plus / Plus
Query: 1 aggtctttagcggtaactgttcctctttgtattcttttactttcttgctccccatcccca 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtctttagaggtaactgttcctctttgtattcttttactttcttgctccccatcccca 260
Query: 61 acctcatttaacccttcctattccattattcccctttcttcctttttgtatgaaattttc 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 261 acctcatttaacccttcctattccattattcccctttcttccttttcgtatgaaattctc 320
Query: 121 tcaaaataaaaaaggcctcaacttgccaggtggtgatggcacatgcttttaatcccagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaataaaaaaggcctcaacttgccaggtggtgatggcacatgcttttaatcccagca 380
Query: 181 ctgggggggcaaagatcagcttggtgaacagagcacgttcaggacagccagggctacaca 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggggg-caaagatcagcttggtgaacagagcacgttcaggacagccagggctacaca 439
Query: 241 gggaaatcctgtctcaaacaaacaaacaaaataacaaaacaaaaaacaaaaaagcagtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggaaatcctgtctcaaacaaacaaacaaaataacaaaacaaaaaacaaaaaagcagtca 499
Query: 301 ttaaaattaaaactctcccaactaaaacgaaaacccagggccagatgggtttaatgcaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttaaaattaaaactctcccaactaaaacgaaaacccagggccagatgggtttaatgcaga 559
Query: 361 attctacctaatacccaaatcacccaaagacccagcaaaagagaatttcagaccaatttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attctacctaatacccaaatcacccaaagacccagcaaaagagaatttcagaccaatttg 619
Query: 421 ctggacgaacattgatgcaaaaaattcaataaaatacttgcaaaccaaatc 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctggacgaacattgatgcaaaaaattcaataaaatacttgcaaaccaaatc 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_j08.g1 MSMg01no079_j08.g1 CHROMAT_FILE:
MSMg01no079_j08.g1 PHD_FILE: MSMg01no079_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:15 2005
(412 letters)
>mm_chr5_104479244_104480054
Length = 811
Score = 756 bits (391), Expect = 0.0
Identities = 407/413 (98%), Gaps = 3/413 (0%)
Strand = Plus / Minus
Query: 1 tctttgg-accattagaaccagacatgatgttggcgttaaggtggaacccacaggttgga 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctttggcaccattagaaccagacatgatgttggcgttaaggtggaacccacaggttgga 363
Query: 60 aatgtgtttctaaggaaaggaaaaaaaaaaaaaagataaacatcttatagacattccaaa 119
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aatgtgtttctaaggaaagg--aaaaaaaaaaaagataaacatcttatagacattccaaa 305
Query: 120 agcatatgaattaaagaacctagttcaaagatccagaaacatttgtcaatttcaaaaccc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agcatatgaattaaagaacctagttcaaagatccagaaacatttgtcaatttcaaaaccc 245
Query: 180 tgtaaaaatcagaaaataatacggcaatgacgattgcatgtgtgtactgctcttccagag 239
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgtaaaaatcagaaaataacacggcaatgacgattgcatgtgtgtactgctcttccagag 185
Query: 240 gacccaagtgtgattcccaacacctaagccacacagctcacaaccacctataactccagc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gacccaagtgtgattcccaacacctaagccacacagctcacaaccacctataactccagc 125
Query: 300 tccagggtatccaaggcctctgacctctaaggtaagctgtttgctgccatctcattgaga 359
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 124 tccagggtatccaaggcctctgacctctaaggcaagctgtttgctgtcatctcattgaga 65
Query: 360 gactctcaaaaccctgctgcttcatttgcatgcgccctgcatccacaaggcag 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gactctcaaaaccctgctgcttcatttgcatgcgccctgcatccacaaggcag 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 811
Length adjustment: 9
Effective length of query: 403
Effective length of database: 802
Effective search space: 323206
Effective search space used: 323206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
