CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTTGATTCTGAGATGGAATATTTTAGGTTTTATTCTGTTATCTCCCTGC
ACAAATCTGCCTCTCTAACAAATTTTCATTTTGTAAGACTGTAAGGACAG
AAGCATATTAAATACTTCAATAATGTCATGTTAACTTCTTCACACCAAAG
ATCTTATCTCCAAATCAGGACACAGTCATTGGAGAAAAGAAAGACGGAAG
CAACAAAAGAGAAGAAAAAGAAAAAGAACAAAATAAACCATGCAACCCCC
CCCCCAAAAAAAGAAAGAGGCTTGAAAAAATTTACGATCAGGAAGACATT
CCTTCTACGTTAACTGCGAAACTATTATCTGATAACTAAAGGTCATAAAC
TGGGAGTGGACAATTTATTGTAGATACAAGGACAGAAAATAAATATTGAT
TGGATTTATTTGTACAAAACTTCAAAACTAATGAGAAATGAGAGATAATT
TGCCTTTTGCTAAAATGCTGCTGACTTTATAACATAAAAATTATTGCCTT
AAAAATTTAATGATCTTATAGAGCTAGAACATAGATAATGGATGTTTAGC
TAGTAACTAATCTTAATGGAAACATGAAAACATTTCTGCTGTAACTACTT
ATTTGACTTATGATGAACATGTGGACTGTAATAATACTTAGAAAACCATG
TGA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAG
ATATTCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTG
GACTGGGTGAAGTGGGTGTTATGGGTTCTGATGATGGTGAGTGGTCCTGG
TTTCTGTTAGTAGGATTCTTACATTTACCTTTCGCCATTTGGCAATCTCT
GGAGTTAGTTGTTATAGTTGTCTTTGTTTAGAGATTGTTCCTCCTGTGAT
TTTGTTACACTCTATCAACAGACGTGGGAGACAAGCTCTCTCCTCTGAGT
TTCAGTGGTCAGAGCAGTCTCTGCAGGCAAGCTCTCCTCTTCCAGGGAAG
GTGCACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGATGAAGGCC
CAAAACAGGGTCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGC
CGGTTGTCTGGAGCCAAAGATGGTGCCGCCTCAGAAGGTCTCTGGCTCTT
GCCTGTCCCAGAAACTGCTGGCCTCTGTATTCTACACCCTCACCCGTGCA
GCCTGCCCTCCGTGGAGTTCCGGAACCAAGGTGGCTCCCGCGGAGCCTTA
GGCAGAAACCTCTCGGGCCAGGCAGACCCGTGTGCTCTCACCAGGAAGG

Query= MSMg01no079_k03.b1 MSMg01no079_k03.b1 CHROMAT_FILE:
MSMg01no079_k03.b1 PHD_FILE: MSMg01no079_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:19 2005
         (619 letters)



>mm_chr5_63467459_63468477
          Length = 1019

 Score = 1178 bits (609), Expect = 0.0
 Identities = 617/621 (99%), Gaps = 4/621 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   atattttaggttttattctgttatctccctgcacaaatctgcctctctaacaaattttca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atattttaggttttattctgttatctccctgcacaaatctgcctctctaacaaattttca 261

                                                                       
Query: 62  ttttgtaagactgtaaggacagaagcatattaaatacttcaataatgtcatgttaacttc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttttgtaagactgtaaggacagaagcatattaaatacttcaataatgtcatgttaacttc 321

                                                                       
Query: 122 ttcacaccaaagatcttatctccaaatcaggacacagtcattggagaaaagaaagacgga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcacaccaaagatcttatctccaaatcaggacacagtcattggagaaaagaaagacgga 381

                                                                       
Query: 182 agcaacaaaagagaagaaaaagaaaaagaacaaaataaaccatgcaacccccccccc--- 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 382 agcaacaaaagagaagaaaaagaaaaagaacaaaataaaccatgcaacccccccccccaa 441

                                                                       
Query: 239 aaaaaaagaaagaggcttgaaaaaatttacgatcaggaagacattccttctacgttaact 298
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 aaaaaaagaaagaggcttgaaaaaa-ttacgatcaggaagacattccttctacgttaact 500

                                                                       
Query: 299 gcgaaactattatctgataactaaaggtcataaactgggagtggacaatttattgtagat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcgaaactattatctgataactaaaggtcataaactgggagtggacaatttattgtagat 560

                                                                       
Query: 359 acaaggacagaaaataaatattgattggatttatttgtacaaaacttcaaaactaatgag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaggacagaaaataaatattgattggatttatttgtacaaaacttcaaaactaatgag 620

                                                                       
Query: 419 aaatgagagataatttgccttttgctaaaatgctgctgactttataacataaaaattatt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatgagagataatttgccttttgctaaaatgctgctgactttataacataaaaattatt 680

                                                                       
Query: 479 gccttaaaaatttaatgatcttatagagctagaacatagataatggatgtttagctagta 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccttaaaaatttaatgatcttatagagctagaacatagataatggatgtttagctagta 740

                                                                       
Query: 539 actaatcttaatggaaacatgaaaacatttctgctgtaactacttatttgacttatgatg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actaatcttaatggaaacatgaaaacatttctgctgtaactacttatttgacttatgatg 800

                                
Query: 599 aacatgtggactgtaataata 619
           |||||||||||||||||||||
Sbjct: 801 aacatgtggactgtaataata 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)