Query= MSMg01no079_l03.b1 MSMg01no079_l03.b1 CHROMAT_FILE:
MSMg01no079_l03.b1 PHD_FILE: MSMg01no079_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:23 2005
(624 letters)
>mm_chr5_31120845_31121868
Length = 1024
Score = 1170 bits (605), Expect = 0.0
Identities = 617/621 (99%)
Strand = Plus / Minus
Query: 4 ggaattcagaaaggccttgagcctttctgtagctggtccatccaaaaggacctcctttct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ggaattcagaaaggccttgagcctttctgtagctggtccatccaaaaggacctcctttct 765
Query: 64 ctctcctcactctgggagaaagcttccctgctggaaggaagggctctttccccatgacct 123
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ctctcctcactctgggaggaggcttccctgctggaaggaagggctctttccccatgacct 705
Query: 124 ctctcccacaagtacagaaactgatctgagtgaagtcatggttcaaggtgcacttcacac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ctctcccacaagtacagaaactgatctgagtgaagtcatggttcaaggtgcacttcacac 645
Query: 184 agtagcggaagtgagcaagggccacgagaggctcactaataggccggtacccggcagctt 243
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 644 agtagcggaagtgagcaagggccacgaaaggctcactaataggccggcacccggcagctt 585
Query: 244 gctttcctatttctgattctgatcattcttagtagagcctacccagcagaaggcctgagc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gctttcctatttctgattctgatcattcttagtagagcctacccagcagaaggcctgagc 525
Query: 304 agccccacgtcacaccaaacccgggctctgctccagtcaactgctcatgcctggccgttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agccccacgtcacaccaaacccgggctctgctccagtcaactgctcatgcctggccgttc 465
Query: 364 tgtcagacaagcaagtcagctgaatgcatggtcacaaaggcccatttcatacatacactc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgtcagacaagcaagtcagctgaatgcatggtcacaaaggcccatttcatacatacactc 405
Query: 424 tctcatttggtagttgaaatgacactgtgactctcaagttttcactggacaaatggctgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tctcatttggtagttgaaatgacactgtgactctcaagttttcactggacaaatggctgc 345
Query: 484 ttctgttggacacaaaggctcccgaggaatggggcagttttgaattagttcaggatggac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttctgttggacacaaaggctcccgaggaatggggcagttttgaattagttcaggatggac 285
Query: 544 ttctcatgacaaactttgagacattattttgacattatggcaccagtaaatgtaaataaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttctcatgacaaactttgagacattattttgacattatggcaccagtaaatgtaaataaa 225
Query: 604 tattgctacctgctatgaagc 624
|||||||||||||||||||||
Sbjct: 224 tattgctacctgctatgaagc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_l03.g1 MSMg01no079_l03.g1 CHROMAT_FILE:
MSMg01no079_l03.g1 PHD_FILE: MSMg01no079_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:23 2005
(573 letters)
>mm_chr5_30930930_30931902
Length = 973
Score = 1013 bits (524), Expect = 0.0
Identities = 564/582 (96%), Gaps = 9/582 (1%)
Strand = Plus / Plus
Query: 1 attggcaaatagggacagagtgtaagggactcttcacgtacttcaccctgtccgtgaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 attggcaaatagggacagagtgtaagggactcttcacgtacttcaccctgtccgtgaaat 251
Query: 61 gtccagccaacaatccctgccctcagcaggagggaacaaaaatcacacctctgaccc-a- 118
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 252 gtccagccaacaatctctgccctcagcaggagggaacaaaaatcacacctctgaccctac 311
Query: 119 -------ggccacctctacacgtcttcatctaccacagttcttgctcccaggaatagggt 171
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 attcattggccacctctacacgtcttcatctaccacagttcttgctcccaggaatagggt 371
Query: 172 acctgtacacaggccatacacagccacagaatgctgtgatctcattccaggatcagactg 231
||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 372 acctgtacacaggccatacacagtcatggaatgctgtgatctcattccgggatcagactg 431
Query: 232 aagtcccagaagtcctgagatttgaactctccaacatcagggctgagagaccttgggcca 291
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 432 aagtcccagaagtcctgagatttgaactctccaacatcagggctgagagactttgggcca 491
Query: 292 atagactgtgaggatccaaccctggagagcagaactgtcccagggtagagagtctgccag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atagactgtgaggatccaaccctggagagcagaactgtcccagggtagagagtctgccag 551
Query: 352 gccctctggcctcgctctgggctttacccactctttaagtgaagagttctgccctgcctt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 552 gccctctggcctcgctctgggctttacccactctttaagtgaagagttctgccttgcctt 611
Query: 412 aatttgaggaacaacaaagctttaggcatttacctgctgggggccccgtgtaaagatgtc 471
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 612 aatttgaggaacaacaaagctttaggcatttacctgctgggggccctgtgtaaagatgtc 671
Query: 472 ctctggcccttctcaaagatggaagaggatgtgccttctaggacctgggactgagctcag 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttctggcccttctcaaagatggaagaggatgtgccttctaggacctgggactgagctcag 731
Query: 532 ccctcccatgaaccacaaccttgctgcttagcccttcccaag 573
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ccctcccatgaaccacaaccttgctgcttagcccttcccaag 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
