XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TGGATTATATTTCTTGTTAAAAGGACATAGTCAAAATCGAGTTTTCAAGA
AGCAGATGGTAGTAACTGTTGCAAAGCCATGCTGAAGACCACTAACTGCA
TAGCCTTAGACTGTGAAGATTGGAGGAAATGCTTGGAACTAGATACAGGG
CCACAAATTAGTACAGAGAAAGCAAAGCTGGGGAAACCAGGGGGAAGGCA
GCTGGCTGCATCCTTGTTGTGACTTTGTGATGCTCTTCTATAAATGTGAC
CTTGGAGACACACCAGACAGAGGGTGTTCAGGGCTCGCTCTCTTCATGAC
TTCTTAGACCTGCATGTCAGTCTACAGTGATTCCATTTTAAAGCTCAGTA
ATTTTTACACCAGCTGTATTTGTTCAAGACCAGTTTTGTCATATAATTTC
ATAGTCGTATCTGGAAATAGTGGGGAAATCAAGTGCTCTTGTTTCATTAA
ATAGCAGCAGTTCCTAAATATAAAGTTTTCCCTTTTTAGCTTAAAAAAAA
TCTAGTTTTCAAACATCATCCACAATATTTGTTTAATTCATATATCACTA
AAAATTTAAACCCTAATTGCACTGAGTAGCCCTGGAACTTACCTGCTTAA
CTTTCCTACGGTGTCTGATCCATCAATTAACCACCCACTGCACATGAAGC
TCTTGGCCAGTATTCTAAA

TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGCCCTGACTGAGTTCGATTATTTCCTGCTGTCT
ACTCCTTTTGGGTGAATTTGCTTCCTTTAGTTCTAGAGCTTCTAGGTGTA
CTGTCAGTCTGCTAGTATATGCTCTCTCTAGTTTCTTTTTGGAGGCAGTC
AGGGCAATGAGTTTTCCTCTTAGGACTGCTTTCATTGTGTCCCATACGTT
TGGGTATGTTGTGGCTTCATATTTCATTAAACTCTAAAAAGTCTTTAATT
TCTTTCTTTATTTCATCCTTGACCAAGGAATCATTGAATAGAGTGTTGTT
CAGTTTCCATGTGAATGTTGGTTTTCTATTATTTATGTTGTTGTTGAAGA
TGAGCCTTAGTTCATAGTCATCAAATAGGATGCATGGGATAATTTCAATA
TTTTTGTATCTGTTGAGTATGGTCAATTTTGGAGGAGGTACCATGTGGCG
CTGAGAAGAAGGTATATTCTTTTGTTTTAGGATAAAATTTTCTGTAGATA
TCAATTAAATCCATTTGTTTCATAACTTCTGTTACTGTCCATGTGTCTCT
GTTTTGTTTCTGTTTCCAGGATCTGTCCATTGGTAAGAGAGGGGTGTTGA
AGTCTCCCACTATCATTGTGTGAGGTGCAATGTGTGCTTTGAGCTTTACT
AAAGTTTCTTTAATAT

Query= MSMg01no079_l10.b1 MSMg01no079_l10.b1 CHROMAT_FILE:
MSMg01no079_l10.b1 PHD_FILE: MSMg01no079_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:25 2005
         (681 letters)



>mm_chr5_4466964_4468044
          Length = 1081

 Score = 1237 bits (640), Expect = 0.0
 Identities = 667/676 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactggattatatttcttgttaaaaggacatagtcaaaatcgagttttcaagaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactggattatatttcttgttaaaaggacatagtcaaaatcgagttttcaagaag 264

                                                                       
Query: 65  cagatggtagtaactgttgcaaagccatgctgaagaccactaactgcatagccttagact 124
           |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 265 cagatggtggtaactgttgcaaagccgtgctgaagaccactaactgtatagccttagact 324

                                                                       
Query: 125 gtgaagattggaggaaatgcttggaactagatacagggccacaaattagtacagagaaag 184
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgaagagtggaggaagtgcttggaactagatacagggccacaaattagtacagagaaag 384

                                                                       
Query: 185 caaagctggggaaaccagggggaaggcagctggctgcatccttgttgtgactttgtgatg 244
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 385 caaagctggggaaaccagggggaaggcagctggctgcatccttgctgtgactgtgtgatg 444

                                                                       
Query: 245 ctcttctataaatgtgaccttggagacacaccagacagagggtgttcagggctcgctctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcttctataaatgtgaccttggagacacaccagacagagggtgttcagggctcgctctc 504

                                                                       
Query: 305 ttcatgacttcttagacctgcatgtcagtctacagtgattccattttaaagctcagtaat 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcatgacttcttagacctgcatatcagtctacagtgattccattttaaagctcagtaat 564

                                                                       
Query: 365 ttttacaccagctgtatttgttcaagaccagttttgtcatataatttcatagtcgtatct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttacaccagctgtatttgttcaagaccagttttgtcatataatttcatagtcgtatct 624

                                                                       
Query: 425 ggaaatagtggggaaatcaagtgctcttgtttcattaaatagcagcagttcctaaatata 484
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaaatattggggaaatcaagtgctcttgtttcattaaatagcagcagttcctaaatata 684

                                                                       
Query: 485 aagttttccctttttagcttaaaaaaaatctagttttcaaacatcatccacaatatttgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagttttccctttttagcttaaaaaaaatctagttttcaaacatcatccacaatatttgt 744

                                                                       
Query: 545 ttaattcatatatcactaaaaatttaaaccctaattgcactgagtagccctggaacttac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaattcatatatcactaaaaatttaaaccctaattgcactgagtagccctggaacttac 804

                                                                       
Query: 605 ctgcttaactttcctacggtgtctgatccatcaattaaccacccactgcacatgaagctc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgcttaactttcctacggtgtctgatccatcaattaaccacccactgcacatgaagctc 864

                           
Query: 665 ttggccagtattctaa 680
           ||||||||||||||||
Sbjct: 865 ttggccagtattctaa 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)