Query= MSMg01no080_d16.b1 MSMg01no080_d16.b1 CHROMAT_FILE:
MSMg01no080_d16.b1 PHD_FILE: MSMg01no080_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:04 2005
(549 letters)
>mm_chr5_45512119_45513063
Length = 945
Score = 901 bits (466), Expect = 0.0
Identities = 525/546 (96%), Gaps = 6/546 (1%)
Strand = Plus / Plus
Query: 5 gaattctttcataa-ccacctctgccatgattccagggcattttttttccataagctatg 63
||||||||||| || || |||||||||||||||||||||| |||||||| ||||||| ||
Sbjct: 205 gaattctttcagaagcc-cctctgccatgattccagggca-tttttttcgataagctgtg 262
Query: 64 atggtaaatattgaaatgccttattttctcccctcatctttgttcagtgatatctagtta 123
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 263 atagtaaatattgaaatgccttattttctcccctcatctttgttcagtgacatctagtta 322
Query: 124 gaacaactgtgtgctgatgtagatgctaagctcataattaacattattgtcaaataaaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaacaactgtgtgctgatgtagatgctaagctcataattaacattattgtcaaataaaaa 382
Query: 184 cacaataaaatctgattcataaacaccattgatgtggtgtatgtactatgtgtcaaatgc 243
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 cacaataaaatctgattcataaacaccattgatgtgatgtatgtactatgtgtcaaatgc 442
Query: 244 tgtcactgaagcctctatacagttttcacttaattctacaacaatccaggaaaatcatgc 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 443 tgtcactgaagcctctatacagttttcgcttaattctacaacaatccaggaaaatcatgc 502
Query: 304 tccaaattgcactggtctatcccatcttccaaatccatgcaacagaataaataaacacac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tccaaattgcactggtctatcccatcttccaaatccatgcaacagaataaataaacacac 562
Query: 364 taaactaaaagcaatatacaatgcttgatgatcaactgaagagtcactttggcattatta 423
| |||||||||||| |||| |||||||||||||||||||||||||||||||| |||| |
Sbjct: 563 tgaactaaaagcaacataccatgcttgatgatcaactgaagagtcactttggaattaatg 622
Query: 424 ccatgtagcaattgaatagcaaagaagagtaaaggtaagctgagagaagggagggccaaa 483
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 623 ccatgtagcaattgaatagcaaagac---taaaggtaagctgagagaagcgagggccaaa 679
Query: 484 gaagtaacgaggtaggagagtgtgagctggaatcggaggtcagaaagctgctatatagag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaagtaacgaggtaggagagtgtgagctggaatcggaggtcagaaagctgctatatagag 739
Query: 544 ttgaag 549
||||||
Sbjct: 740 ttgaag 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 945
Length adjustment: 10
Effective length of query: 539
Effective length of database: 935
Effective search space: 503965
Effective search space used: 503965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_d16.g1 MSMg01no080_d16.g1 CHROMAT_FILE:
MSMg01no080_d16.g1 PHD_FILE: MSMg01no080_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:04 2005
(338 letters)
>mm_chr5_45669018_45669757
Length = 740
Score = 623 bits (322), Expect = 0.0
Identities = 335/340 (98%), Gaps = 2/340 (0%)
Strand = Plus / Minus
Query: 1 gaatcatcaaaggc--agagcattgaattcccacggaagcccgctgagtagggggttttc 58
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaatcatcaaaggcagagagcattgaattcccacggaagcccgctgagtagggggttttc 481
Query: 59 ctgatgagctctgctgatgaggaaaatgtagtggagaaagacgcaaaagtcccagtggaa 118
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 480 ctgatgagctctgctgatgaggaaaatgtagcggagaaagacgcaaaagtcccagtggaa 421
Query: 119 tccagtgagggatcacctagcaagaaataaacaaaagagggccaagcgtctttgcacatg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 420 tccagtgagggatcacctagcaagaaataaacaaaagagggccaagcgtctttgcacttg 361
Query: 179 gagctgacaagctccgcataatgtaaccctgtccagaagagcagtaccctgctcagagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gagctgacaagctccgcataatgtaaccctgtccagaagagcagtaccctgctcagagca 301
Query: 239 tgagaatagctttctgcagtgctgtgtaaacagtctttttcactagccttcctggctgct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgagaatagctttctgcagtgctgtgtaaacagtctttttcactagccttcctggctgct 241
Query: 299 aaactgggagaagcttaagtggagaaggaggaggaggagg 338
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 240 aaactgggagaagcttaagtggaggaggaggaggaggagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 740
Length adjustment: 9
Effective length of query: 329
Effective length of database: 731
Effective search space: 240499
Effective search space used: 240499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
