AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCACCTCTGTACCCCATTTTTTAATGAGGTTATTTGAATTTCTG
GAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATACATGTTTACTA
TGTTCATAGCATCCTTATTTATAATGGCCAGAAGCTGGAAAGAATCCAGA
TGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTAACAATG
GAGTACTATTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAGGCAA
ATGATGGATCTGGAGGTTATCATCCTGAATGAGGTAACCCAATCACAAAA
GAAGTCACTTGATATGCACTCACTGATAAGTAGATATTAGCCCAGAAACT
TAGAATACCCAATATACAATTTGCAAAACACAAGAAAATCAAGAAGAAGG
AAGACCAACGTGTGGATACTTCATTCCTCCTTAGAATAGGGAACAAAATA
CCCATGGAAGAAGTTACAGAGACAAATTTTGGAGCTGAGATGAATGGATG
AACCATCCAGAGACTACCCCACATGGGAGTCCATCCCATAATCAGCCACC
AAATGTAGACACTATTGCATATGCCAGCAGGTTTTTGCTGAAAAGAGCCT
GATATAGCTGCCTCGTGTGAGGCTATTCCAGTGCCTGACAAATACT

TGCAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGCCATAAAACTTTACATCTCTGGATGTG
AACATATAAGTAATTCTGATTCCCACATAGCCAATATCCATACTGGAACC
TAGACCACAATACTACCCAGAAATCTATTTTCTGAAGGACAGGTAAGAAT
TACGTACGAGTACCCAGCCCTGGCATTTTAAAGTTAAGTAAGAACATGGA
TAACGGGATTGTAGTGGGCAGCAGTTAAGAACCATAACTGTTAACTCGGT
TCTACTTATTTTGGTAGATAGTTAGACTATGGGAAAGATGCAATTACAGC
AATTTTTATTGAGATTAAGTCTTTGCTATAATACTGACTAAAATGACAAG
CACAGAGACTATGGAACCATCATAAGTTAATACCCCTGGAGCCCAGGAGG
AAAGCATTTTTAGCGATATTGTTCTTACATATGGATGCAACGATTTTTCT
CCTTTTATGAAAATTTCATTGAAATAATCGAACATATTAGGGAAAATTGT
GATTGAATAAGTGCAAGTTGGTTTTAAGTCTGAATTTCTTCAGGAGTAAC
AGCTAGCAATTTCTATTTTATTGCAGGTTGTAAGGAATCCTCTGAAACTT
GCTCTCATGTTGTCTCCACCATGAAATGATTTTGTCTTCATTTAA

Query= MSMg01no080_e11.g1 MSMg01no080_e11.g1 CHROMAT_FILE:
MSMg01no080_e11.g1 PHD_FILE: MSMg01no080_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:08 2005
         (498 letters)



>mm_chr5_40333751_40334647
          Length = 897

 Score =  919 bits (475), Expect = 0.0
 Identities = 490/495 (98%), Gaps = 1/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ccataaaactttacatctctggatgtgaacatataagtaattctgattcccacatagcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ccataaaactttacatctctggatgtgaacatataagtaattctgattcccacatagcca 638

                                                                       
Query: 64  atatccatactggaacctagaccacaatactacccagaaatctattttctgaaggacagg 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 637 atatccatactggaacctagaccacaatactacccagcaatctattttctgaaggacagg 578

                                                                       
Query: 124 taagaattacgtacgagtacccagccctggcattttaaagttaagtaagaacatggataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 taagaattacgtacgagtacccagccctggcattttaaagttaagtaagaacatggataa 518

                                                                       
Query: 184 cgggattgtagtgggcagcagttaagaaccataactgttaactcggttctacttattttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cgggattgtagtgggcagcagttaagaaccataactgttaactcggttctacttattttg 458

                                                                       
Query: 244 gtagatagttagactatgggaaagatgcaattacagcaatttttattgagattaagtctt 303
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 457 gtagatagttagactatgggaaagatgcaattatagcaatttt-attgagattaagtctt 399

                                                                       
Query: 304 tgctataatactgactaaaatgacaagcacagagactatggaaccatcataagttaatac 363
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgctagaatactgactaaaatgacaagcacagagactatggaaccatcataagttaatac 339

                                                                       
Query: 364 ccctggagcccaggaggaaagcatttttagcgatattgttcttacatatggatgcaacga 423
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 338 ccctggagcccaggaggaaagcatttttagtgatattgttcttacatatggatgcaacga 279

                                                                       
Query: 424 tttttctccttttatgaaaatttcattgaaataatcgaacatattagggaaaattgtgat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tttttctccttttatgaaaatttcattgaaataatcgaacatattagggaaaattgtgat 219

                          
Query: 484 tgaataagtgcaagt 498
           |||||||||||||||
Sbjct: 218 tgaataagtgcaagt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 897
Length adjustment: 10
Effective length of query: 488
Effective length of database: 887
Effective search space:   432856
Effective search space used:   432856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)