BAC Information

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BAC

Clone NameMSMg01-080G08
Chromosome5 (Build37)
Map Location 34,593,888 - 34,594,400
singlet/doubletsinglet
Overlap geneZfyve28
Upstream geneCtbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4
Downstream geneEG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080G08.T7 (MSMg01no080_g08.b1)MSMg01-080G08.TJ (MSMg01no080_g08.g1)
ACCAG301249AG301250
length695701
length of high quality
(start - end)
518 (39 - 556)242 (70 - 311)
definitionCHROMAT_FILE: MSMg01no080_g08.b1 PHD_FILE: MSMg01no080_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:17 2005CHROMAT_FILE: MSMg01no080_g08.g1 PHD_FILE: MSMg01no080_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTATACGACTCCTATTTCCAGAGGACCGCGGAATTCCA
GAAAGGAGACTACAAGAGACACTATATGTGTTTTTTTCTGGCCCCTGTGG
TCCATTATATTGGGCGAAGAGCAACCCTCTACTACACAAAAGGTGCATAG
GCATACAGGCAGGGAGTAGGGGAAGATAATTCCTCCTCAGCTGAACACAG
CAGAAACCAAACCAAAAGATCATACAATCGCACTCAATAGTAAATAAAGA
TAGCTCCAGCACAGCCCCTGCCAAACACACCAACTGAGGGTGGACCAGAA
AGAGATAGCCACCAAAATATGCCACATCAGAAAGATTTGAGAATAAAGAA
CTCTGGCTAGTGGTCCCTGTGGAACCTTATCCGTACCTGGGAGATTCACC
ATACATTCTGAGAGCCAGAATCCTACGTTTCCTGAAAATCTTCTATAGCA
AGTGCTGCCCAATGGGATATTCTCTGAGATGGTGCTTAGGTCTCCCTGCA
GGCAAGGCTATGCCTCTCTGGCTTCTCAGCAATCTGGTAAGTTAAGGTTT
TAGACCTAGCTTAGACACCCCAACAAGAATCACCCCCTGGGGGCTGGTGA
GACGGCTCAGTGTGTACGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGT
TCAAATCTCAGCCATTACATGGTGGCTCACAACCTTCCGCAATGC
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGGAATATTTGAAATTTTTTTAAAAATTAT
TTATTTTATGTGTGAGTACATTGTTGCTGTCTTCAGACATGACATCAGAT
CCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTC
AGGGCCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCC
AGCCCCGGAATATTTGAAATTTTACACATTATTTTATTTTACTTTGTTGA
GGCTTTGTTGGAGATCTCATGTAGCCTGGAACTCAATTTGTAGACCATGC
TGGCCTCAAACTTCTGCCTGCCTTTACCTCCCAAGTGCTGGGATTAGATA
AATGCGCCACATCCCCTGACTTATTTACTTACTGAGTGCATATACATGTA
CCACAGAGTACTTGTAGCACCCTTACTTAGCCTTGTCCCAGTCGGCTCTC
TCACCGTGTGTTCCCTGTACGTTCTGATGTTATGTAAGCTTATAATACGC
TGTTTGCGTTTCCTGAATGCGTTCCTGTTTTTGGCCCTATTTTCCTCCGC
ATTTTAAGCCTGTTTTTTATACCCCCCCCCCTGGTCTGTTGTTTTGTTTG
TGTTACGACCCTTTTTTTACCTTCCCCCCCTCTTTTTCCCCTTTTTTCCC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_g08.b1 MSMg01no080_g08.b1 CHROMAT_FILE:
MSMg01no080_g08.b1 PHD_FILE: MSMg01no080_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:17 2005
         (518 letters)



>mm_chr5_34593684_34594602
          Length = 919

 Score =  977 bits (505), Expect = 0.0
 Identities = 511/513 (99%), Gaps = 1/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaaaggagac-tacaagagacactatatgtgtttttttctggcccctgtggt 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaaaggagacatacaagagacactatatgtgtttttttctggcccctgtggt 264

                                                                       
Query: 64  ccattatattgggcgaagagcaaccctctactacacaaaaggtgcataggcatacaggca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccattatattgggcgaagagcaaccctctactacacaaaaggtgcataggcatacaggca 324

                                                                       
Query: 124 gggagtaggggaagataattcctcctcagctgaacacagcagaaaccaaaccaaaagatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggagtaggggaagataattcctcctcagctgaacacagcagaaaccaaaccaaaagatc 384

                                                                       
Query: 184 atacaatcgcactcaatagtaaataaagatagctccagcacagcccctgccaaacacacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atacaatcgcactcaatagtaaataaagatagctccagcacagcccctgccaaacacacc 444

                                                                       
Query: 244 aactgagggtggaccagaaagagatagccaccaaaatatgccacatcagaaagatttgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aactgagggtggaccagaaagagatagccaccaaaatatgccacatcagaaagatttgag 504

                                                                       
Query: 304 aataaagaactctggctagtggtccctgtggaaccttatccgtacctgggagattcacca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aataaagaactctggctagtggtccctgtggaaccttatccgtacctgggagattcacca 564

                                                                       
Query: 364 tacattctgagagccagaatcctacgtttcctgaaaatcttctatagcaagtgctgccca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacattctgagagccagaatcctacgtttcctgaaaatcttctatagcaagtgctgccca 624

                                                                       
Query: 424 atgggatattctctgagatggtgcttaggtctccctgcaggcaaggctatgcctctctgg 483
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 625 atgggatattctctgagatggtgcttaggcctccctgcaggcaaggctatgcctctctgg 684

                                            
Query: 484 cttctcagcaatctggtaagttaaggttttaga 516
           |||||||||||||||||||||||||||||||||
Sbjct: 685 cttctcagcaatctggtaagttaaggttttaga 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space:   461772
Effective search space used:   461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)