BAC Information

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BAC

Clone NameMSMg01-080G10
Chromosome5 (Build37)
Map Location 127,154,090 - 127,154,447
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327, Tmem132c, Slc15a4, Glt1d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080G10.T7 (MSMg01no080_g10.b1)MSMg01-080G10.TJ (MSMg01no080_g10.g1)
ACCAG301253AG301254
length709701
length of high quality
(start - end)
263 (40 - 302)358 (67 - 424)
definitionCHROMAT_FILE: MSMg01no080_g10.b1 PHD_FILE: MSMg01no080_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:18 2005CHROMAT_FILE: MSMg01no080_g10.g1 PHD_FILE: MSMg01no080_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CATCTTTACCCATAGGAAGGAGAAAGAGGGTGAACAGGAAGTGGAGCAAG
GTTACAAACTCTCAAAGCCCATCCCCAGTGCCATACTTCCTCCAGCAAGG
CTTAATCCCCCCTAAGGGTTCCATACCCTCCCAAACAGTGCCACATACCG
AGGAACCAGTGTTCAAAAATGCCTGGGGAGGGGAGAGATTTCTCACTCTA
ACCACAAATGCTCTGCCAAAAGGAAAACATATTAGGGACTGATCTAGCTT
AACATAAATAACAATTATCTTAATATTCCTGAGATGCGCACACAAATCTT
TCCTGTGGTAAACACAAAATGGGATCTATACCACTGTGAAAGTACCGAGA
GAAAAGTACCCCACACCTAGTCTCCATCAGATAGCAGTGATTGTTAGAGC
ACGGTGAGTGCTACTTTGCGCAGGTGTTTGCGCACTGCCCCCCCACGTGG
AATATCCTCCTCCTGAGGACATCTACTGGCTCCTCATACATTCGCGCTCT
GCGTATTTCTTACCTCTTTTTTTATGTTTTGCCATAAGATCCCTGTCATC
CCCATTTTTTCTCCCATATTTTTTTTTCCCTCCGCCTTTTACCCGCCCTT
TTTTTTGTCCCCCCACCACTTACCCCCTACTCTTTTTTTTTTCCTACCTT
TCCCCTTTG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGAGAATCACTTGTCTCTGGAGTACTGGGATT
AAAGGTGTGTGCCACCACTATCTAGTGCATAGACTCATTGAGAGTGAGCC
TGGTCTATTGTCTTAGAAAGCATGACGACTCAGACCAGAGTGAATATAAA
ATGAAAAATCAGGAATGAAATGTTTCCACACTGCTATTTTTTGTTGCAAA
CTCTGAACTTATGGGGCAACAAAATATTACCCACTCTTTCCGACTCTGAC
TCTGAGCCTAATGCGTCAAGCAACAAAAACACAAACAGAAGAGCAGTCAA
TTGTGTTGAAATTGGACATTCTGGAGGAGGGAACAATGAAGTCCTAACTC
AGCCTCACCCAGTTATCATGAAGGAAACAAAAAGGTTGGGTTTATTTAGG
GAAACTTGAATAGATGCAACCAGCCACAATTAAGACACTCTACAATCATG
CCGAGATTATGTTATACTAAGTACCAAAGGTTTTTAAATGTGATAATGGT
TACTAATGTCAAGTCCTGCATAAAGACAAATTCATTGATGAATTCTCAGT
CACTTAGCCGAGCCTGTTTTAAGCATGCCCAGCGATCTGGTGGTTCCCAG
GCTTTTGCCCCTGCTTGTATGCTAACGACCCACTTCCTTCCTATTGTGAC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_g10.g1 MSMg01no080_g10.g1 CHROMAT_FILE:
MSMg01no080_g10.g1 PHD_FILE: MSMg01no080_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:18 2005
         (358 letters)



>mm_chr5_127153890_127154647
          Length = 758

 Score =  661 bits (342), Expect = 0.0
 Identities = 354/358 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagaatcacttgtctctggagtactgggattaaaggtgtgtgccaccactatctagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagagaatcacttgtctctggagtactgggattaaaggtgtgtgccaccactatctagt 260

                                                                       
Query: 61  gcatagactcattgagagtgagcctggtctattgtcttagaaagcatgacgactcagacc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatagacttattgagagtgagcctggtctattgtcttagaaagcatgacgactcagacc 320

                                                                       
Query: 121 agagtgaatataaaatgaaaaatcaggaatgaaatgtttccacactgctattttttgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 agagtgaatataaaatgaaaaatcaggaatgaaatgtttccacactgctatgttttgttg 380

                                                                       
Query: 181 caaactctgaacttatggggcaacaaaatattacccactctttccgactctgactctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaactctgaacttatggggcaacaaaatattacccactctttccgactctgactctgag 440

                                                                       
Query: 241 cctaatgcgtcaagcaacaaaaacacaaacagaagagcagtcaattgtgttgaaattgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaatgcgtcaagcaacaaaaacacaaacagaagagcagtcaattgtgttgaaattgga 500

                                                                     
Query: 301 cattctggaggagggaacaatgaagtcctaactcagcctcacccagttatcatgaagg 358
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 501 cattctggaggagggaacaatgaagtcctaactcagcctcagtcagttatcatgaagg 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)