BAC Information

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BAC

Clone NameMSMg01-080M13
Chromosome5 (Build37)
Map Location 14,505,509 - 14,506,022
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080M13.T7 (MSMg01no080_m13.b1)MSMg01-080M13.TJ (MSMg01no080_m13.g1)
ACCAG301538AG301539
length682685
length of high quality
(start - end)
521 (43 - 563)244 (73 - 316)
definitionCHROMAT_FILE: MSMg01no080_m13.b1 PHD_FILE: MSMg01no080_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:47 2005CHROMAT_FILE: MSMg01no080_m13.g1 PHD_FILE: MSMg01no080_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAA
TTCTCCTATATGCCGAGCCTCTATCTATTCTTGTATCAGTTGTTTAAGTC
TCTATAATTTTTCTTTTCTTATGGGCCACTGCTCTCATCAAAGAGGTTAG
TTTGAAAACCATTTTAGAGGCATGGCTATCGGTATGTCAGCAGTGTCCAC
TTTTATAAATTTGGAAACTTAAATTTTCACATTCACATTTTTGTTGGTGA
TTTGGATAAGCTCTCTGGTTACATGGGACCCAGTAATCAAACTCTACGTG
TGTCTGTACAAAGTCTAGAGGAGAAGTGGTATATGAGGAAGTCCAGCCAT
TTCAGGACCTCCAGAAACATGATGTGAGGGCTATAGAGGATAGAACTGTT
CACTCTACTGATGACTTGCAGTCACCAGTTTTTTTGCCATGAAACTTGAG
ATGAGCAAAAAGAGTATGCTGTTCTTTATTGTGCCCCACAGTGAGCCTAG
ACACTGGCTGAGCCTGGACACTGGTAGGTAGCTGCAGAGTACCACCTGCT
CCTCCTTCACAGACATTTTCACATACTGACCTGTAGGGTTGGAGTTGTTC
ACAATGACTGACTGAGAACAAAGTGATCCCTTTGTGCTGCTCATCATCCC
CAAGGTGAAATAGTTGTTACTACACCATAGCC
AATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAGCAGATGGATCTTTAATGGCTGAGA
ATCATTTAAAGAAATGTTCAATGACCTTAGTCATTAGGGAAATGCAAATC
AAAATGGCTCTGAGATTCCATTTACACCTGTTGGAATGGCTAAGACCAGA
AGCCTCAAATGGCAGCACATACTGGCAAAGATGTGGGATATGGGGAACAT
TCCTCCACTGCTGGGAGTGCAAACTAGTATAACCACTCTGGAAATCAATC
TCGTTATTTCTCAAAAAAAATATTAAAAAAAAGAAAAGAACAAAACCAGA
AAAGAAAAGAAAAAAATGCATAGTTCTACCTCAAGACCCAGCTATACTAC
TCCTGGACATATAGCTGAAAGATGCCCCACTATACCATAAGGAAACTTGT
ACAACTGTGTTCACAGCAGCCTAAGTCATAATATCCAGAAACTGGGAACA
ACCTACATGTCCCTCAACAGATATGGATAATGAAAATGCGATTCATTTAC
ACAATGGAACACTATTCAGCTATTAAAAATAAGGACATCACTAAATTTTC
AGGTAAATGTATGGAACTAGAGAATACCATCCTGAGTGAGAATAACCAGT
CCCAAAGGACATACATGCTATATGCTCATTGGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_m13.b1 MSMg01no080_m13.b1 CHROMAT_FILE:
MSMg01no080_m13.b1 PHD_FILE: MSMg01no080_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:47 2005
         (521 letters)



>mm_chr5_14505304_14506222
          Length = 919

 Score =  901 bits (466), Expect = 0.0
 Identities = 503/516 (97%), Gaps = 2/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctcctatatgccgagcctctatctattcttgtatcagttgtttaagtctctataa 65
           |||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctcgtatatattgagcctctatctattcttgtatcagttgtttaagtctctataa 265

                                                                       
Query: 66  tttttcttttcttatgggccactgctctcatcaaagaggttagtttgaaaaccattttag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttttcttttcttatgggccactgctctcatcaaagaggttagtttgaaaaccattttag 325

                                                                       
Query: 126 aggcatggctatcggtatgtcagcagtgtccacttttataaatttggaaacttaaatttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggcatggctatcggtatgtcagcagtgtccacttttataaatttggaaacttaaatttt 385

                                                                       
Query: 186 cacattcacatttttgttggtgatttggataagctctctggttacatgggacccagtaat 245
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 386 cacattcacatttttgttggtgatttggataagctctctggctacatgggacccagtaat 445

                                                                       
Query: 246 caaactctacgtgtgtctgtacaaagtctagaggagaagtggtatatgaggaagtccagc 305
           ||||||||  |||||| |||||||||||||||||||||||| ||||| ||||||||||| 
Sbjct: 446 caaactct--gtgtgtgtgtacaaagtctagaggagaagtgatatataaggaagtccagt 503

                                                                       
Query: 306 catttcaggacctccagaaacatgatgtgagggctatagaggatagaactgttcactcta 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catttcaggacctccagaaacatgatgtgagggctatagaggatagaactgttcactcta 563

                                                                       
Query: 366 ctgatgacttgcagtcaccagtttttttgccatgaaacttgagatgagcaaaaagagtat 425
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgatgacttgtagtcaccagtttttttgccatgaaacttgagatgagcaaaaagagtat 623

                                                                       
Query: 426 gctgttctttattgtgccccacagtgagcctagacactggctgagcctggacactggtag 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctgttctttattgtgccccacagtgagcctagacactggctgagcctggacactggtag 683

                                               
Query: 486 gtagctgcagagtaccacctgctcctccttcacaga 521
           ||||||||||||||||||| ||||||||||||||||
Sbjct: 684 gtagctgcagagtaccaccagctcctccttcacaga 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 919
Length adjustment: 10
Effective length of query: 511
Effective length of database: 909
Effective search space:   464499
Effective search space used:   464499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)