Query= MSMg01no082_f17.b1 MSMg01no082_f17.b1 CHROMAT_FILE:
MSMg01no082_f17.b1 PHD_FILE: MSMg01no082_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:48 2005
(610 letters)
>mm_chr5_93673104_93674113
Length = 1010
Score = 1006 bits (520), Expect = 0.0
Identities = 579/606 (95%), Gaps = 14/606 (2%)
Strand = Plus / Minus
Query: 5 gaattcacttacaattcccggtgagggatggaatgttaactcaacatggactaatctttg 64
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gaattcacttacaataacaggtgagggatggaatgttaactcaacatggactaatctttg 831
Query: 65 aatcagcaaccagtagttagtcctttcttctgtaaccaaaacacgtgggaggaggaatca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 aatcagcaaccagtagttagtcctttcttctgtaaccaaaacacgtgggaggaggaatca 771
Query: 125 agatagaggtgggagtgggtcccttaatatacctatggccagtcacagcagattggctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 agatagaggtgggagtgggtcccttaatatacctatggccagtcacagcagattggctct 711
Query: 185 cctgcttgggagcaagggcagaatgcttagccaggagacatgacaatggctcagtagaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 710 cctgcttgggagcaagggcagaatgcttagccaggagacatgacaatggctcaatagaat 651
Query: 245 tggaaggtgagatgacataatttttattttggctcgtcatagtatgggctgggacgattg 304
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct: 650 tggaaggtgagatgacataatctttattttggctcttcatagtatgggctgggacaattg 591
Query: 305 ttccaaatgactgggaacaaattggattgcagtaacacagtagcatcagagaatatcgtg 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 590 ttccaaatgactgagaacaaattggattgcagtaacacagtagcatcagagaacatcgtg 531
Query: 365 tctgaagccaggggattcttaaagggtcttcttagtaatttggtctacaataatataatt 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 530 tctgaagccaggggattcttaaagggtcttcttagtagtttggtctacaataatataatt 471
Query: 425 tagtgcaaaactatagcaatgaaaaacaaaatcaatccaaataggcatgcacatatttcg 484
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tagtgcaagactatagcaatgaaaaacaaaatcaatccaaataggcatgcacatatttcg 411
Query: 485 gtacaaaagcttggatcacactttgcagacagactgtactgtctttactagcactttgtg 544
||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 410 gtacaaaagcttggatc-----------acagactgtactctctttactagcactttgtg 362
Query: 545 tctcctcattttggaagatgggttttaaaaaaaaaagtcttcattcataccaagcataat 604
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 361 tctcctcattttggaagat-ggttt--aaaaaaaaagtcttcattcataccaagcataac 305
Query: 605 ggaatt 610
||||||
Sbjct: 304 ggaatt 299
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_f17.g1 MSMg01no082_f17.g1 CHROMAT_FILE:
MSMg01no082_f17.g1 PHD_FILE: MSMg01no082_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:48 2005
(567 letters)
>mm_chr5_93520858_93521824
Length = 967
Score = 1000 bits (517), Expect = 0.0
Identities = 558/577 (96%), Gaps = 12/577 (2%)
Strand = Plus / Plus
Query: 1 actctaggcagcttctagctcctcactcacctaccagagcagcccagcatcagatcagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 actctaggcagcttctagctcctcactcacctaccagagcagcccagcatcagatcagct 252
Query: 61 actggtgaaccagtgctagtcacttaccctcagccaaagactggacagagagcatctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 actggtgaaccagtgctagtcacttaccctcagccaaagactggacagagagcatctgaa 312
Query: 121 tcccgtagccaaaagtgggttcccagaaacttggatgtttgaagtctcaggtatgactct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcccgtagccaaaagtgggttcccagaaacttggatgtttgaagtctcaggtatgactct 372
Query: 181 cagatgcccgccctagttctccccccacgcccctgccccgtgggcgcgttcatgtgggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cagatgcccgccctagttctccccccacgcccctgccccgtgggcgcgttcatgtgggct 432
Query: 241 aaatacagcccttcccttgcctcttcccctgcgcttcaagtcacctactttcctcaactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aaatacagcccttcccttgcctcttcccctgcgcttcaagtcacctactttcctcaactc 492
Query: 301 aatca--agtagctatcctcacgtgatcgtgggtctaccatgcgtggacactcacagctc 358
| | |||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 493 a--cgtgagtagctatcctcacgtgatcgtgggtctaccatgcgtggacacccacagcgc 550
Query: 359 attacacttctccctgttaagcctatgtcagatgcatgtacaaggaccccgccatttcgc 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 551 attacacttctccctgttaagcctatgtcagatgtatgtacaaggaccccgccatttcgc 610
Query: 419 ctgccactcagacactgtaattattccaacatctgctgaggg-------gggggga-gtc 470
|||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct: 611 ctgccactcagacactgtaattattccaacatctgctgggggtgggggtggggggaagtc 670
Query: 471 cttcttagtggtggaggagccctcccagttccctgtgctgtgaggcgcacccacttgaca 530
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 671 cttcttagtggtggaggagccctcccagttccctgtgctgtgagtcgcacccacttgtca 730
Query: 531 cccgcttctcgccttcgctgtgcaccacaccccgcag 567
|||||||||||||||||||||||||||||||||||||
Sbjct: 731 cccgcttctcgccttcgctgtgcaccacaccccgcag 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
