BAC Information

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BAC

Clone NameMSMg01-082O05
Chromosome5 (Build37)
Map Location 91,040,037 - 91,040,176
singlet/doubletsinglet
Overlap geneRassf6
Upstream geneLOC631105, Adamts3, EG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307
Downstream geneCxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082O05.T7 (MSMg01no082_o05.b1)MSMg01-082O05.TJ (MSMg01no082_o05.g1)
ACCAG303150AG303151
length680680
length of high quality
(start - end)
---140 (73 - 212)
definitionCHROMAT_FILE: MSMg01no082_o05.b1 PHD_FILE: MSMg01no082_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:28 2005CHROMAT_FILE: MSMg01no082_o05.g1 PHD_FILE: MSMg01no082_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACAATTTGCGGCGCTAAACCACTCCTATTACGGCGAGGATCCGCGGA
ATTCCTTATTCTCCTTCATAACACAGCAACTCTTTAAAAGAACACTACAG
ACATCTAAATATCTCAGCAATCCATATTCAAACATGTTAAGTATGTTTTC
AAAACTCTAAGAGTATAGATATTTGCTAAAGTTTCTCTCCCTAGAAATAA
CTTCTACATGTTTTTTATGAAAACTAGGTACGGAACTTCTTTGCTCCTTA
CCTTCTTCCCCTATCTAAAATATATACTATCTAACATATATAGTTAGCGC
CCCAAATAGTAACTACCTATTACACTAGTTAACAATCTAATAAATAGTAT
ACAGTTTGTTGAGTAACCCATGACATTATCGCCTACTACGAAGACATCAA
ATGCCTCACATTACCCCATGAGAACACATTGATCCTTCCAGAACTTACCC
ATTTAGAAATTCCACCTAAGGAACTGTATTCTACATACGTTTCTGCATGA
CACAGCCACTTTCTAAAACCATAAAACTTATATGCCCCCCCATGCTCATC
ACTACCAACACCTCTTACCACACCCTCGAAACCCCAGTACCACACGCCTC
TCATTTACTGAAAGACCCCGATGACCCCCATTGTCTTCTCCTGCCCCTCC
CTCGCGTCCTCCCTCCCCCTTTTCCCCCCG
ATTGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTGATGCCTTTTGTAACTCTTGTTTT
ATTTGATCTACAGCAGCTATAAGATGTAGATAATATGATCCTAATATATT
TGCTAATAAAACTTCGAGCAAACTCTACTAGCTGGAAATATTGTCAGTCA
AAATACATGTCAAGAATTAGAGGAACTATATTGCTAGTAGCTCAAGTCTC
TACTCACATTCCATCCATAGAATATGATGAGATCCATAGACCCATAGAAT
ACACATGAATAAAATTGAACATTTCCTCCAATTTGTCAAATATTAGGAAT
CAAAAGTAGTCATGTGTTGGGAGCCGCCTCCACATTCGCCGTCACAAGAT
GGCGCTGACATCCTGTGTTCTAATTGGCAAACCAATAATCTGCGCATGCG
TCATGGGCATTTTACGACTACTTGTACTCTGCCTTTCCCGTTGAACGTCA
GTTCGGCCTATGGGCTGCCACCTATCATGTAGCGAAGCGTCCTATGTGAA
ATTTTACTCTCCTAATAACGCGCTTGGGTGAATTTTTCTGCCATTCTCTC
TTTTTGGCATTTCTCTGCTTTCGCACGCACTTGTGCTCTCCTTCCTGCAC
TAATGATTTTACTCTTAAGTTGTGTTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_o05.g1 MSMg01no082_o05.g1 CHROMAT_FILE:
MSMg01no082_o05.g1 PHD_FILE: MSMg01no082_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:28 2005
         (140 letters)



>mm_chr5_91039837_91040376
          Length = 540

 Score =  263 bits (136), Expect = 3e-75
 Identities = 139/140 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgatgccttttgtaactcttgttttatttgatctacagcagctataagatgtagata 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgatgccttttgtaactcttgtcttatttgatctacagcagctataagatgtagata 260

                                                                       
Query: 61  atatgatcctaatatatttgctaataaaacttcgagcaaactctactagctggaaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatgatcctaatatatttgctaataaaacttcgagcaaactctactagctggaaatatt 320

                               
Query: 121 gtcagtcaaaatacatgtca 140
           ||||||||||||||||||||
Sbjct: 321 gtcagtcaaaatacatgtca 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)