BAC Information

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BAC

Clone NameMSMg01-083B18
Chromosome5 (Build37)
Map Location 119,872,214 - 119,937,262
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665162, Thrap2, LOC100039488, EG665194
Downstream geneLOC100039529, LOC100039542, Tbx3, EG433945, Tbx5, Rbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083B18.T7 (MSMg01no083_b18.b1)MSMg01-083B18.TJ (MSMg01no083_b18.g1)
ACCAG303320AG303321
length737761
length of high quality
(start - end)		265 (42 - 306)341 (71 - 411)
definitionCHROMAT_FILE: MSMg01no083_b18.b1 PHD_FILE: MSMg01no083_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:45 2005CHROMAT_FILE: MSMg01no083_b18.g1 PHD_FILE: MSMg01no083_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,937,002 - 119,937,262)(119,872,214 - 119,872,554)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATGTTCTGTACCCTCAGATGCCCCTTTGAGTGTGACTTGCCCCGAGTC
AAATGATACATCCGACTGAACCACTGGGCTCGCCCCTCCTCCTGGAGGCG
ATTGAAATGATGATGGTGGTTGGCATCTGGGATGTACCCCTGTTCAACTC
GATGGCTAGCTGGGTCAGAGGTCAGCAGCTGGGGAGTCTCTGTATCTCCT
CTCTCCTGAGTGGAAGGCTCCCAGACTGACTTCGTTTTCAGCATTTTGAG
TAAAGGGCAGCTCATGTTATTACGTCTGGACTTCAGATTTCCGTAGCCAT
GTTCTTTGAAGGCTTTCTTCCGACCTCTATACTTTTAGTTTTTTTATGAC
TATATGTTTTTTTATTCTCACTCTCTTAATCTATTTATAATTCATGTATT
TTTACAAATTATTTTTTTATTTTCTCATATTATCCTTATTTTATTTTTTT
TTATTAATTTTATATCTTTCTATTTATTTATTTTATATATATCTTTTATT
AACTCTCATTTCCTCTTCGTTCTTCTTTTTTTCTTTCTTTTTTTTTTTTT
TTTCTTTTCTCTCTTATTTTTTTATTCTTTTACATCTTGCTCTTTAACTT
CTTTTCACCCTTATTAACTTTTATTCAATCTCTTTTTATTTATACTTAAT
TTTTTTATTCTTATTATTTTTAATTATAATTTATTTT

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAGCCTTAACTCAAAGCAGGGCTCTTAGA
TTTCTGCACCTGGAAGAGGGCCCGTGGTGAACAGGAGTGAGCCCTTGTCA
TTGGGGAAGGGAAATTGGTGTGAAATTAACAAGGTCGTGATCCAGCTCTT
GGGAACCTAGGCTCCCAATTTTCTGCCTTAATGAGATTTTTTTCCCCATA
CTTTGCCTGTCCCGCATCATGTCTTTCAAAAAACTGAAAAACACATACTT
GTCCACATTGTCCAAACACTGATTTTAGTCCCTTTCTTTTTTCAAAAAGA
AAGGAAGACAGACAGACAAAAGGAAAGAAAGAAGGAAGGAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGATTTATTGTATTTTTCCTCTTTTTTTTTT
TTTTTTTTTTTTTTTATTTCTTTTTTCCTTCTCTCCTTTATCTTCGTTTA
CTCTTCCGCCTCTCTTTTTTTTCTTTCTCTTTTTTTTCTATTTTCGTTTT
TTGTTTTCCTTTTCTTCATTTATACTGTTTCTTGTCTCTTTTTTATTTCT
TTAATTTCTCTTTATCATTTTTTTTTTGTTTTTTTTTCGCCGCCCCCTTC
TTTATTTTCACCTCTAATTACTCTCAACATTATTTTTCTTCTTTCGTTGC
ATTTCTTATTTTTCCACGATTTGTTCTCTCATCTCTTCTGCTATCTCCGA
CACGTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_b18.b1 MSMg01no083_b18.b1 CHROMAT_FILE:
MSMg01no083_b18.b1 PHD_FILE: MSMg01no083_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:45 2005
         (265 letters)



>mm_chr5_119936798_119937462
          Length = 665

 Score =  489 bits (253), Expect = e-143
 Identities = 259/261 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgttctgtaccctcagatgcccctttgagtgtgacttgccccgagtcaaatg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaattccatgttctgtaacctcagatgcccctttgagtgtgacttgccccgagtcaaatg 406

                                                                       
Query: 65  atacatccgactgaaccactgggctcgcccctcctcctggaggcgattgaaatgatgatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atacatccgactgaaccactgggctcgcccctcctcctggaggcgattgaaatgatgatg 346

                                                                       
Query: 125 gtggttggcatctgggatgtacccctgttcaactcgatggctagctgggtcagaggtcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 345 gtggttggcatctgggatgtacccctgttcaactcgatggctagctggggcagaggtcag 286

                                                                       
Query: 185 cagctggggagtctctgtatctcctctctcctgagtggaaggctcccagactgacttcgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cagctggggagtctctgtatctcctctctcctgagtggaaggctcccagactgacttcgt 226

                                
Query: 245 tttcagcattttgagtaaagg 265
           |||||||||||||||||||||
Sbjct: 225 tttcagcattttgagtaaagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no083_b18.g1 MSMg01no083_b18.g1 CHROMAT_FILE:
MSMg01no083_b18.g1 PHD_FILE: MSMg01no083_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:45 2005
         (341 letters)



>mm_chr5_119872014_119872754
          Length = 741

 Score =  629 bits (325), Expect = 0.0
 Identities = 337/341 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagccttaactcaaagcagggctcttagatttctgcacctggaagagggcccgtggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agagccttaactcaaagcagggctcttagatttctgcacctggaagacggcccgtggtga 260

                                                                       
Query: 61  acaggagtgagcccttgtcattggggaagggaaattggtgtgaaattaacaaggtcgtga 120
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggagtgagcccttgtcatcagggaagggaaattggtgtgaaattaacaaggtcgtga 320

                                                                       
Query: 121 tccagctcttgggaacctaggctcccaattttctgccttaatgagatttttttccccata 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagctcttgggaacctgggctcccaattttctgccttaatgagatttttttccccata 380

                                                                       
Query: 181 ctttgcctgtcccgcatcatgtctttcaaaaaactgaaaaacacatacttgtccacattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgcctgtcccgcatcatgtctttcaaaaaactgaaaaacacatacttgtccacattg 440

                                                                       
Query: 241 tccaaacactgattttagtccctttcttttttcaaaaagaaaggaagacagacagacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaaacactgattttagtccctttcttttttcaaaaagaaaggaagacagacagacaaa 500

                                                    
Query: 301 aggaaagaaagaaggaaggaaggaaggaaggaaggaaggaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaaagaaagaaggaaggaaggaaggaaggaaggaaggaa 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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