AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGAGCTCTCGGGGCTCCTGGAAGCATGCTCTATTCAGAAACATAGA
GTTGCAGTTTGGAAATCTGCTGAGGGCTTTGAAGCTCCACATGTAAGACG
TTTGGGGGCTGTGGGAGAGCCTTTTCTAAAATCTCAGAGGGCAGTGAGCA
GATTTTGTGTAAACTGGAAGTCCCCAAAAGCTGGTGGGTTGGACAGTGTC
GGTGGTGTAGCCCACTCCTTATCCCTCTTTTTTTTTTTACTCCTCCGTCC
CTCCCCCTTTTTCCCTCCTCTTTTCTTTCTCTCTCCTTTCTCCATTCTTA
TTATTTTTTTTTCTCTCATTCCTCCTGTCCCTTGTTGTTTTTTTATTTTT
CTCCTCTTTTTTATTTTTCTCTCCTTATATTTTATTTATTTCATTTTCTT
TATTTTTTCTATTTTTTTTAATTTCTTTATTTTTTATTTATATTAATTTT
TTTTTTTTTTATAATATTATATTATCTTTTTTATTTCTTTATTTATCATA
TTCTTTTTATTTTATTTTTTTTCATATTTTTTATTATCTTTTTTTTTTTT
TCTACTTTTTATTTCTTTTCTAATTTATATTATCTCATTATACCATTAAA
ACTCATCTTTTATATTTCTTTATTATTTCATACTCCTACTTTCTTACTCA
TTTTTCTATTCAATAATTAATATACTACCTTTTTATATTTTTTTAATTTC
AN

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAACTACTGGTCAAGGCTTCCGGAGACAATG
GGTGTCACATTTCAAAGGAGGTGCTAGATAGACTATACCAAGAAGTTCAA
AGCAGACGATCAAAAGCTGGATGGATGTTTTACCCACATGCAAGCTATCA
AAAAGGACCAACAGACAGGAGAGAGGAATTTTGAATATGTATTTTTGGGA
AGTGTAATGTTGAATGGTGAGACTTTTTCACTCAATAAGAGACAAGAGAG
GAGGTGTCTGATTCTCATACTATTTCCAGTGATGATGAGAGTCTACATCA
GACCCACCCAGAGAAGTTCTGTGAATGTTCTCTACAATGGGGAACAGGCC
TGGGATTGGGTGGTTGTGGTGGTGGATGTCGACTACCGCGGATTTTTTGA
TCTTCCCTAGATAATTCGATAACGAACCCCGGTCCGCCTGACCGCCTCCT
ACCGCTCACTACTTTTTCAACTCCCAACATCTATTGACTTCTTTTTCTTT
TGATATCTCCAATCTCCTGCCTCTTCTGATAGTTCTCCTGCGTATTTACT
TTTTTCTCATCTTATTTACTCTATATTCATTCCCCTCTTATGTTTTTTTC
TGTTCTTTTCTTTTGACATTATTTACTCTCACCTTATCTTTTCTTCTTTT
ATCTACCTAATTCACTTTCGCTTTCTACTTCATCTCACTCTAACCT

Query= MSMg01no083_d14.b1 MSMg01no083_d14.b1 CHROMAT_FILE:
MSMg01no083_d14.b1 PHD_FILE: MSMg01no083_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:54 2005
         (195 letters)



>mm_chr5_39421529_39422123
          Length = 595

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctctgagctctcggggctcctggaagcatgctctattcagaaacatagagttgca 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gaattctctgagctctgggggctcctggaagcatgctctattcagaaacatagagttgca 336

                                                                       
Query: 64  gtttggaaatctgctgagggctttgaagctccacatgtaagacgtttgggggctgtggga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtttggaaatctgctgagggctttgaagctccacatgtaagacgtttgggggctgtggga 276

                                                                       
Query: 124 gagccttttctaaaatctcagagggcagtgagcagattttgtgtaaactggaagtcccca 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gagccttttctaaaatcacagagggcagtgagcagattttgtgtaaactggaagtcccca 216

                       
Query: 184 aaagctggtggg 195
           ||||||||||||
Sbjct: 215 aaagctggtggg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no083_d14.g1 MSMg01no083_d14.g1 CHROMAT_FILE:
MSMg01no083_d14.g1 PHD_FILE: MSMg01no083_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:54 2005
         (219 letters)



>mm_chr5_39296456_39297074
          Length = 619

 Score =  420 bits (217), Expect = e-122
 Identities = 217/217 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaactactggtcaaggcttccggagacaatgggtgtcacatttcaaaggaggtgctaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaactactggtcaaggcttccggagacaatgggtgtcacatttcaaaggaggtgctaga 260

                                                                       
Query: 61  tagactataccaagaagttcaaagcagacgatcaaaagctggatggatgttttacccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagactataccaagaagttcaaagcagacgatcaaaagctggatggatgttttacccaca 320

                                                                       
Query: 121 tgcaagctatcaaaaaggaccaacagacaggagagaggaattttgaatatgtatttttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaagctatcaaaaaggaccaacagacaggagagaggaattttgaatatgtatttttgg 380

                                                
Query: 181 gaagtgtaatgttgaatggtgagactttttcactcaa 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagtgtaatgttgaatggtgagactttttcactcaa 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)