BAC Information

Click to search

BAC

Clone NameMSMg01-083J07
Chromosome5 (Build37)
Map Location 119,254,338 - 119,254,700
singlet/doubletsinglet
Overlap genenone
Upstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
Downstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3, EG433945
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083J07.T7 (MSMg01no083_j07.b1)MSMg01-083J07.TJ (MSMg01no083_j07.g1)
ACCAG303661AG303662
length692765
length of high quality
(start - end)
366 (44 - 409)42 (75 - 116)
definitionCHROMAT_FILE: MSMg01no083_j07.b1 PHD_FILE: MSMg01no083_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:21 2005CHROMAT_FILE: MSMg01no083_j07.g1 PHD_FILE: MSMg01no083_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCACTTCCCCCATAACAAAGATGGTGGCCTTTCTTACTAACCCCAG
ACTCAACCTCAGAGCCCTTACCACAGGCTTCTCAATCACACAGTCAGCCA
TGGGATGGAGATGGGATGAAGAGCCAATGACTCTAAAGATGTCTGTCACA
AGTGAGGACACTTCAAGGGTTTAGCTAAGGCAGGTCTTAGGCTCACATGA
CACAGACAGCCCCTTTTATGTATAGCTGGGAGCCCTCTTGGGGCATAGCT
CATCAGACCTTAGGCCGTTAAGGGATGGCCAATGCTCAGAATATTATAGG
AGTCCAGTATCTTTTACTAGTCCTGCCACTTTTCTACCTGGAATAGTCCC
TCCACCTTGTGCCCCTCAGTTTCCCCATATAATATGAACTAGCATCCCCT
GGTACTACTGTGAGGATAGGCTGATAGGCAAGGCCTTGGATCATCTTGTA
CCCTCTACTGATCAATTATATGACTATTGTGGCACAAGTTTATCTATATC
TACACATCTTTGCCCTTCTTTGTGAGTATGTTGCTAATGGAGCTCGTTAT
TCTTTATAGATTTTTTATCTCTTCCTGTTCTCCACATCTCTTTTCTGGTA
TTCTTTTTTTCTCTTGACCTTGTTTTCTTTTGGCTTTATTCT
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTGAGGGTGTGGGGTGCTGTGGTTT
GAGCTGTGGTTGGCGGTTAATTGTGGAGCCCTCCTCTCTATGCGCACCAG
ACTACAGACTAAACGATACTCGATTCTCCATTCTTTACTTTATTCATTTT
TTTTCTACCTATTTCTTATGTCTTTCTGTCTTCGTTCCTTACTTACGTAT
TATTCCCCGTATCATCCCCAACCTTCACTTTCGTTAATGATCTTGTACCA
CTCAATACAAAAAAGGGATAATAAACTCTTAGTAAAACACCCGTAAAATG
AATATAAGAAGCGAGAAAAATCCGCACTCCACAATAAAACAAAAAAAAAA
CAATATCGTCTATAAAAAAAAAAAGGGGGGACACCACCAGAGGACGTGAC
GTATAATAAGAGAAATAAGAGTAATCATCAAAAATAATAAAAAAAGATAA
CAGAAACAAAGCTGATAAAAACACTATACAATAACTTTACAAAACCTAAA
TGAATGCAAATTGTTTTCGTTCTATCGTACGATTCGGAATTAATTATTTC
TTTACTTACCGCGTTGCCGATTTCTTGTAACATGCCGCCCGAAGGAAGGT
TACCGCAGGTATATATTTCTCACCACCACCTCTTCCAAACAAAGATCGCC
ACTTTATCACACCAGCAGAGCGATTGGCCGCTCACTATTAACATTCACAT
CACAAAGAAAACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_j07.b1 MSMg01no083_j07.b1 CHROMAT_FILE:
MSMg01no083_j07.b1 PHD_FILE: MSMg01no083_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:21 2005
         (366 letters)



>mm_chr5_119254135_119254900
          Length = 766

 Score =  671 bits (347), Expect = 0.0
 Identities = 359/363 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctcacttcccccataacaaagatggtggcctttcttactaaccccagactcaa 63
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaattcttcacttcccccataacaaagatggtggcctttcttactaaccccagactcaa 507

                                                                       
Query: 64  cctcagagcccttaccacaggcttctcaatcacacagtcagccatgggatggagatggga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cctcagagcccttaccacaggcttctcaatcacacagtcagccatgggatggagatggga 447

                                                                       
Query: 124 tgaagagccaatgactctaaagatgtctgtcacaagtgaggacacttcaagggtttagct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgaagagccaatgactctaaagatgtctgtcacaagtgaggacacttcaagggtttagct 387

                                                                       
Query: 184 aaggcaggtcttaggctcacatgacacagacagccccttttatgtatagctgggagccct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaggcaggtcttaggctcacatgacacagacagccccttttatgtatagctgggagccct 327

                                                                       
Query: 244 cttggggcatagctcatcagaccttaggccgttaagggatggccaatgctcagaatatta 303
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 326 cttggggcatagctcatcagaccttaggccgggaagggatggccaatgctcagaatatta 267

                                                                       
Query: 304 taggagtccagtatcttttactagtcctgccacttttctacctggaatagtccctccacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 266 taggagtccagtatcttttactagtcctgccacttttctacctggaaaagtccctccacc 207

              
Query: 364 ttg 366
           |||
Sbjct: 206 ttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)