CACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCTTTGCCCTACAGAGCCTATTTTGAAGGTACAGGTATCATTT
CTTCTGCAGTCATTGTTTGCAAACTGTAATAAACCGTGAAGCTTATAGCA
AGGGGACAAATAGAATTTATTTTCTTTCTCTGATGTGCATATGCCAGGTA
AAGTATCAAAGTCAGCTATTTAAGTGAGAACTAGAATAGTAATAGGCAGA
TAATAATTTTTTCTACCTGTCTCCAGTTACTTTTTTCACTGTATTAAAAA
TAGTGGCAACATTCTACCCACATATCTTCTATCATTTAAATGCACTTGAA
TCTTTAAATTGGAGGGAAAAGCACCTTTATATAAAATGAATATAGAATTT
TTCATTCTAATGCATGTATTTTGGTAACTATTAGTAAATTACTTTCTACA
ATCGAAACATTATTCAGAAAAGATAATAAAGAACTGTAAATACTACACTC
TCATCTATTTTAGGGTCCTAAAGGGTTAAATTGTTTCATTTTATCCCATA
GGCTATTACTTATCTATCAAAGTTGTACTAGTATAGATGATACAGTTTAT
TCACCTTTACAGCATAGGGGAATTAAGGGATTGAGCCATTCATGGCTACT
TATGCATTATTTGATATTTGTATATAAT

NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTATGTGTGTGAAAGTGTATGTCTGTGT
CTACGTGCATTCTGTGCCTTCCCCTTGGCTTTTATTCTTGTTGGTTGTTC
TGTCCTACACCAGTTTTGCTTGCTCTGGCTTTATCTTATTGCATTTTATT
ATTATTCCTTAGATTCTGTTTTTCTAATGAGAAGCAGATAGGGTGTGGAT
CTGGATGGGATGGGAGGGCAAGAGGAATTTGGAGTGTTAGGGGTTNTTTT
NNNNGGTTGAGTTTTTATTGTTTTGAATAATTAGTCATGCTAGATCCCTC
ATTGTTTTATCTGCCTCCCCCTCCTTATTTTTCTTTCTCTTAGTTTTATT
TCTCTTTTATTCCCCCCTTTACTTTTTATTTATTTTCTCTTTCCCTATAT
ATTCCCATACTTCAACTCCATCACGCATGCTTACGGCGTTTTGTCCTATT
AATCTTCCGTATTGTATTTACATTTTGATCACGTACTTTCTCGACTACTT
CCTTGATGTCACCTCTACGTTCGTATTACTACCCTAATTTTCATTATGTT
CCTTAATGCTCCTCCTCGCATTTTCGATATTTTATCCCACTTACTACATT
CTAATTATGATACTTAAATCTTTATTGATTCGCCTCTTTTTCTAGATCCA
CATATTTTTACCCTTGTA

Query= MSMg01no083_m01.b1 MSMg01no083_m01.b1 CHROMAT_FILE:
MSMg01no083_m01.b1 PHD_FILE: MSMg01no083_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:34 2005
         (555 letters)



>mm_chr5_15706454_15707411
          Length = 958

 Score =  946 bits (489), Expect = 0.0
 Identities = 539/557 (96%), Gaps = 7/557 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcctttgccctacagagcctattttgaagg-tacaggtatcatttcttctgca 62
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 204 ggaattctcctttgccctacagagcctattttgaaggttacaggtatcatttcttctaca 263

                                                                       
Query: 63  gtcattgtttgcaaactgtaataaaccgtgaagcttatagcaaggggacaaatagaattt 122
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 gtcattgtttgcaacctgtaataaaccatgaagcttatagcaaggggacaaatagaattt 323

                                                                       
Query: 123 attttctttctctgatgtgcatatgccaggtaaagtatcaaagtcagctatttaagtgag 182
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 attttctttctctgatgtgcatatgccagataaagtatcaaagtcagctatttaagtgag 383

                                                                       
Query: 183 aac---tagaatagtaa-taggcagataataattttttctacctgtctccagttactttt 238
           |||    ||| |||||| || ||||||||||| |||||||||||| ||||||||||||||
Sbjct: 384 aacgaggagagtagtaatta-gcagataataa-tttttctacctgactccagttactttt 441

                                                                       
Query: 239 ttcactgtattaaaaatagtggcaacattctacccacatatcttctatcatttaaatgca 298
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 442 ttcactgtattaaaaatagtggcaacatactacccacatatcttctatcatttaaatgca 501

                                                                       
Query: 299 cttgaatctttaaattggagggaaaagcacctttatataaaatgaatatagaatttttca 358
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cttgaagctttaaattggagggaaaagcacctttatataaaatgaatatagaatttttca 561

                                                                       
Query: 359 ttctaatgcatgtattttggtaactattagtaaattactttctacaatcgaaacattatt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttctaatgcatgtattttggtaactattagtaaattactttctacaatcgaaacattatt 621

                                                                       
Query: 419 cagaaaagataataaagaactgtaaatactacactctcatctattttagggtcctaaagg 478
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 622 cagaaaagataataaagaactgtaaatattacactctcacctattttagggtcctaaagg 681

                                                                       
Query: 479 gttaaattgtttcattttatcccataggctattacttatctatcaaagttgtactagtat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gttaaattgtttcattttatcccataggctattacttatctatcaaagttgtactagtat 741

                            
Query: 539 agatgatacagtttatt 555
           |||||||||||||||||
Sbjct: 742 agatgatacagtttatt 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 958
Length adjustment: 10
Effective length of query: 545
Effective length of database: 948
Effective search space:   516660
Effective search space used:   516660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)