BAC Information

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BAC

Clone NameMSMg01-084H04
Chromosome5 (Build37)
Map Location 136,036,250 - 136,036,760
singlet/doubletsinglet
Overlap geneCcl26l
Upstream geneRfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1
Downstream geneCcl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084H04.T7 (MSMg01no084_h04.b1)MSMg01-084H04.TJ (MSMg01no084_h04.g1)
ACCAG304298AG304299
length681678
length of high quality
(start - end)
295 (40 - 334)514 (49 - 562)
definitionCHROMAT_FILE: MSMg01no084_h04.b1 PHD_FILE: MSMg01no084_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:28 2005CHROMAT_FILE: MSMg01no084_h04.g1 PHD_FILE: MSMg01no084_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATTCAGAGGATCCGCGGAATTCAAGAGATCTGCCTGCCCCTGC
CTCCTGAGTGCTGAATTAAAGGTGTGTACCACCATGGTAGGAGCTTGCTA
GCTCTCGCTCTCGCTCTCGCTCTCGCTCTCTCGCTCGCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTACAGAGTCAG
CCCAAGCTGGCACACAGCTTAGGATAACCTTGACCTCCTGATCTTCCTGA
CCTTGACCTCCTGATCTTCCTGCCTCCCTCTAATTGCTGGGATTGCAGGC
CTCAGCTTCTTCATGCACTGCCATCTCAGTGGTCCTTAGCGTGTTCCAAA
CTATCCTCGGTCGCTGATATATTCAGCAGCAAGGGGAACTCAGGCTTGGC
GGGCAAATCACACCGTGAACTCATCAAGTGCTCATAGAGAGTGTTGTTCG
GGGTCACTAAGTTGACCAAGAAACAGAGAGAGAGAGAGTAAGGGTCAGCA
TCGTATCATCTTGGTCCAGTTAGACATCTTAAATTCATGGAAGCCAGAGT
CTACTTCAGTCGTAGTTCTTAGATTCTGAGAGGTTTTGGTACTTATTGTA
GATCTTAGCAGATAGTGGCTCATCAAATTCGTTGATGTATAAGGCGATAT
CGCACCCTCGTCTCTTTTGTTTCTCGCTAGG
CCTGGATACGTACTCGAGGTGAACTATAGAAGGATCGCTAAAATTCATCA
GGTTCCATGAGGGCAAAGGAGCCGAGAGCTGCGTTTAACAGTCCTTGAGC
TGAAAATTCAGCAGGGTCACGAATGGTTCCTGGTGTTCATCAGAGAGATG
AATTTCTGCACCCATTTGGCCCCTGGCTGGACACAGAATTGCTTACCTGT
TTTTGTAAAGAATCTGCAGAAAAGAGATATGAAGTGAATTTTGACATCCA
TGGCTTATGAAGCTTATGAAAGAGGAGGTTGGGTGGACTTCTGTACGATG
GTCATCCCCTATCCAACACAACCACTACACCCCATTCCTGTCACAACTCC
TGTTAAGCCTGCTTCCCCTTTCTATCTCCCCCAGAATCCACACACCCTCA
AACCCACATTCCCCAGGAATCATGTCTCAGAAGGTTTAGTTAGTTGTCAG
GCAGTAATCTGTATTGTGATAGTTTTGTTTCAGTGTAACAGCTTTATTGA
GCCATAATTCACCCACTCTGTGAAGCACATATTTGACATGGTTATAAATA
ATAATACTCATCTAGTACAGCCTAGAATCCCCAGGGAGGGGCTGGGGGTA
TGGCTCAGTGCTAGAGCCCCTGCCTAGAATCCCCAGTGAGGGCCTGGGGG
CGTGTCTCAAAGGTAGAGCCCCTGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_h04.g1 MSMg01no084_h04.g1 CHROMAT_FILE:
MSMg01no084_h04.g1 PHD_FILE: MSMg01no084_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:28 2005
         (514 letters)



>mm_chr5_136036050_136036962
          Length = 913

 Score =  909 bits (470), Expect = 0.0
 Identities = 502/514 (97%), Gaps = 5/514 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggttccatgagggcaaaggagccgagagctgcgtttaacagtccttgagctgaaaatt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 caggttccatgagggcaaaggagccgagaactgcgtttaacagtccttgagctgaaaatt 260

                                                                       
Query: 61  cagcagggtcacgaatggttcctggtgttcatcagagagatgaatttctgcacccatttg 120
           |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 261 cagcagggtcacaaatggttcctggtgttcaccagagagatgaatctctgcacccatttg 320

                                                                       
Query: 121 gcccctggctggacacagaattgcttacctgtttttgtaaagaatctgcagaaaagagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccctggctggacacagaattgcttacctgtttttgtaaagaatctgcagaaaagagat 380

                                                                       
Query: 181 atgaagtgaattttgacatccatggcttatgaagcttatgaaagaggaggttgggtggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaagtgaattttgacatccatggcttatgaagcttatgaaagaggaggttgggtggac 440

                                                                       
Query: 241 ttctg--tacgatggtcatcccctatccaacacaaccactacaccccattcctgtcacaa 298
           |||||  || |  |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgatta-g--ggtcgtcccctatccaacacaaccactacaccccattcctgtcacaa 497

                                                                       
Query: 299 ctcctgttaagcctgcttcccctttctatctcccccagaatccacacaccctcaaaccca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 498 ctcctgttaagcctgcttcccctttctatctcccccagaatccacacaccctcaagccca 557

                                                                       
Query: 359 cattccccaggaatcatgtctcagaaggtttagttagttgtcaggcagtaatctgtattg 418
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cattcccaaggaatcatgtctcagaaggtttagttagttgtcaggcagtaatctgtattg 617

                                                                       
Query: 419 tgatagttttgtttcagtgtaacagctttattgagccataattcacccactctgtgaagc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgatagttttgtttcagtgtaacagctttattgagccataattcacccactctgtgaagc 677

                                             
Query: 479 acatatttgacatggttataaataataatactca 512
           ||||||||||||||||||||||||||||||||||
Sbjct: 678 acatatttgacatggttataaataataatactca 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space:   455112
Effective search space used:   455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)