Query= MSMg01no084_i16.b1 MSMg01no084_i16.b1 CHROMAT_FILE:
MSMg01no084_i16.b1 PHD_FILE: MSMg01no084_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:36 2005
(521 letters)
>mm_chr5_4827704_4828624
Length = 921
Score = 619 bits (320), Expect = 0.0
Identities = 332/336 (98%)
Strand = Plus / Minus
Query: 5 gaattctcttccatgtactcaaatactaaaagcttgtgtgcacggtaataaataaataag 64
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 336 gaattctcttccatgtactcaaatactaaaagcttgtgtgcatggtaataaataaataag 277
Query: 65 atttcttttaatggatccagacttacctgaggacaactgtagggttaatacaacaaagat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atttcttttaatggatccagacttacctgaggacaactgtagggttaatacaacaaagat 217
Query: 125 tcctctttactttgtgtgtgtgtatctgtgtgcatgcatgtgtgtgtgtgtgttaaaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tcctctttactttgtgtgtgtgtatctgtgtgcatgcatgtgtgtgtgtgtgttaaaaga 157
Query: 185 tgaactaaggcaccactttttgctgactctgagctctcctatttggttggtcttactagt 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tgaactaagacaccactttttgctgactctgagctctcctatttggttggtcttactagt 97
Query: 245 cagctttccctgcggctcgcctaaatgcctactaagctaggattataaataagcaagcca 304
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 96 cagctttccctgcagctcgcctaaatgcctactaagctgggattataaataagcaagcca 37
Query: 305 ctatgcttgcctggatttttttatatatgtatgggt 340
||||||||||||||||||||||||||||||||||||
Sbjct: 36 ctatgcttgcctggatttttttatatatgtatgggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_i16.g1 MSMg01no084_i16.g1 CHROMAT_FILE:
MSMg01no084_i16.g1 PHD_FILE: MSMg01no084_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:36 2005
(513 letters)
>mm_chr5_4667813_4668725
Length = 913
Score = 930 bits (481), Expect = 0.0
Identities = 505/513 (98%)
Strand = Plus / Plus
Query: 1 cagacaaaagcaactgaaggaaagaagggttcattttgcccagtgatcacactttggtgg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cagacaaaagcaactgaaggaaagaagggttcgttttgcccagtgatcacactttggtgg 260
Query: 61 agaaagcacagtgacaagaatgtaagcctggtttcatggattataagggatggtaaaatc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agaaagcacagtgacaagaatgtaagcctggtttcatggattataagggatgataaaatc 320
Query: 121 cgaagactcacccttacatgacacattacctctagtgaatctctaccctcaaacattcca 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 cgaagactcacccttacatgacacattacctctaatgaatctctaccctcaaacattcca 380
Query: 181 aaacaagaccaccaactaggaaccaaatatttaaatatgtgtgactacggagggcatttt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aaacaagaccaccaactaggaaccaaatatttaaatatgtatgactacggagggcatttt 440
Query: 241 gcagggaagccacaacagctggggctctgaagtcaagatgttggcagagtcatttccttc 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagggaagccacaacagctgggactctgaagtcaagatgttggcagagtcatttccttc 500
Query: 301 tgggattttcaacggacattgtatttcatgttctaaaggttgctaacaaagaccagaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggattttcaacggacattgtatttcatgttctaaaggttgctaacaaagaccagaaat 560
Query: 361 tccgtgtttgttggttatggcattatcccttcagtctctacttatgtcatcccatagatg 420
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 tccgtgtttgttggttatggcattatcccttcagtctctacatatgtcatcccatagata 620
Query: 421 tgtgtctctgtatctaaatttttatataccttcacactcacaagcaccatggcttaattt 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 tgtgtctctgtatctaaatttttatataccttgacactcacaagcaccatggcttaattt 680
Query: 481 taattaaaaataaaaaatatggtaacccatgat 513
|||||||||||||||||||||||||||||||||
Sbjct: 681 taattaaaaataaaaaatatggtaacccatgat 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
