Query= MSMg01no084_j22.b1 MSMg01no084_j22.b1 CHROMAT_FILE:
MSMg01no084_j22.b1 PHD_FILE: MSMg01no084_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:41 2005
(580 letters)
>mm_chr5_16295271_16296250
Length = 980
Score = 1019 bits (527), Expect = 0.0
Identities = 566/579 (97%)
Strand = Plus / Minus
Query: 2 ccaaagcttggatacccatgaacatggcaagtgagatgtctgcacattgataacttcaat 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ccaaagcttggatacccatgaacatggcaagtgagatgtctgcacattgataacttcaac 721
Query: 62 ttcaaccagaacataggcactgtgatctatgggggtttcaggctttagcacagcctagaa 121
| ||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||||
Sbjct: 720 tccaaccagaacacaggcaccgtgatctatgggggtttcaggttttagcccagcctagaa 661
Query: 122 aatgaggactcctaattcaggcagagactttattgcaaaaacaggcatggagttataaaa 181
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aatgaggactccgaattcaggcagagactttattgcaaaaacaggcatggagttataaaa 601
Query: 182 gatgctatgtaatggtctcttctggactctactggcaaacacagatatcctcacgtgtgc 241
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gatgccatgtaatggtctcttctggactctactggcaaacacagatatcctcacgtgtgc 541
Query: 242 ttgtgtatacactcacatcgataaaaattagattatgtatatgcttagaagttttccagt 301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttgtgtatacactcacatggataaaaattagattatgtatatgcttagaagttttccagt 481
Query: 302 tggaaagtatgctaaacacatctcagaaatataggcacaatggaagaagtgcagtgtttg 361
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tggaaagtatgctaatcacatctcagaaatataggcacaatggaagaagtgcagtgtttg 421
Query: 362 acacacaaagaccaaatactcagaagcaataaatatcaacagatgtaaaacagtgataag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acacacaaagaccaaatactcagaagcaataaatatcaacagatgtaaaacagtgataag 361
Query: 422 gtttgaaaatcactgaaatattttattcaaaaattcctcttcttggaatgttatgagaga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtttgaaaatcactgaaatattttattcaaaaattcctcttcttggaatgttatgagaga 301
Query: 482 ttggctagacttcaaatttgccgtgatgggctaggggagataaactcaagccctacccaa 541
||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct: 300 ttggctagacttcaaatttgctgtgatgggcaaggggagataaactcaagcactacccaa 241
Query: 542 taactgagaaacatctgcaattaatgccagatggaaaaa 580
|||||||||||||||||||||||||||||||||||||||
Sbjct: 240 taactgagaaacatctgcaattaatgccagatggaaaaa 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_j22.g1 MSMg01no084_j22.g1 CHROMAT_FILE:
MSMg01no084_j22.g1 PHD_FILE: MSMg01no084_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:42 2005
(548 letters)
>mm_chr5_16162184_16163128
Length = 945
Score = 965 bits (499), Expect = 0.0
Identities = 536/550 (97%), Gaps = 7/550 (1%)
Strand = Plus / Plus
Query: 1 tcttaaataatgctatgaggaatgccagccttactttttctgaacttcccacttccagtc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tcttaaataatgctatgaggaatgccagcctcactttttctgaacttcccacttccagtc 260
Query: 61 tctgaattagcatgatctctgtagctattaagtgtattagtgccttcatgatgctgttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaattagcatgatctctgtagctattaagtgtattagtgccttcatgatgctgttga 320
Query: 121 gataggaaacatattgcaaataaacaaacaattgcagggcaattttgtgcaactgaattg 180
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 321 gataggaaacatattgcaaataaaca--c--ttgcagggcaattttgtgcaactgaattg 376
Query: 181 attcattagctttctcatagttcttccaaacagttaaaa-gaagtttgaatagaacaaga 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 377 attcattagctttctcatagttcttccaaacagttaaaaagaagtttgaatagaacaaga 436
Query: 240 tacatttggtagttatggtacaagctctgaatgaaactaaaattgcatctgaaagtatca 299
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 437 tacatttggtagttatggtacaagctctgaatgaaactaaaattgcacctgaaaatatca 496
Query: 300 caaattagttattttcctctgctttcttaaaatactgtga-agttctttgaactaatcag 358
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 497 caaattagttattttcctctgctttcttaaaatactgtgaca-ttctttgaactaatcag 555
Query: 359 tgaatagaaaataacttatgtaaggattgattttaatttttttcatgctttttccctgtg 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgaacagaaaataacttatgtaaggattgattttaatttttttcatgctttttccctgtg 615
Query: 419 caattttaattgatttttaacgttgttggcaatttttagtctgtatattcctgaatcaga 478
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 616 caattttaattgatttttaacgttgttggtaatttttagtctgtatattcctgaatcaga 675
Query: 479 tatattaagatagaatgccaagcatcaacctttcanatgtccatctccttacttgctcta 538
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 676 tatattaagatagaatgccaagcatcatcctttcaaatgtccatctccttacttgctcta 735
Query: 539 gctatttact 548
||||||||||
Sbjct: 736 gctatttact 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 945
Length adjustment: 10
Effective length of query: 538
Effective length of database: 935
Effective search space: 503030
Effective search space used: 503030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
