BAC Information

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BAC

Clone NameMSMg01-084O12
Chromosome5 (Build37)
Map Location 126,085,358 - 126,085,621
singlet/doubletsinglet
Overlap geneTmem132b
Upstream geneAtp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs
Downstream geneEG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084O12.T7 (MSMg01no084_o12.b1)MSMg01-084O12.TJ (MSMg01no084_o12.g1)
ACCAG304632AG304633
length712749
length of high quality
(start - end)
374 (40 - 413)264 (70 - 333)
definitionCHROMAT_FILE: MSMg01no084_o12.b1 PHD_FILE: MSMg01no084_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:03 2005CHROMAT_FILE: MSMg01no084_o12.g1 PHD_FILE: MSMg01no084_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTTCTAGTCCGGACCTTTGAAGGAAGAAGACACATGCCTTTGATCCATAT
CTCAAGCCGGAAAGACATGGCTTTAATCTGGGCCATACACTGTCCTGGAA
GTGTATATAAAGACATAGAAGAAGGAAGCTTTTGCTCTCTGCCTACTTGC
CCTCACCTTGTTAGCACATCCATTCCTTCACTGGCAGTAGAATCTACCAA
CTTCTTCAGGACTCCAGCATATACTGAAGACCAGCTGAGACATCCAGCCT
TTGTGAACTGAGCAACTACTCTATTCTTGGACTTCCTCTTCATAGGCAGC
CATTGTTGGATTAGCTGGACTGCAGCTTGTAAATCATTCCACTAGATTAT
ATATGTGCATACCTACATATGAGAGAGAGTAAAGAGAGAGAGAGAGAGAG
TCATTCTATAAGTTCTGTTACTCTTGAAATTTTGGTTGAACACTGTGGCT
CTTGGCTCTTTATGTCACTGCTCAGGGAATCAGTTCATGTTTGTGTGACA
GTCATTTAACTGAGCCATCATCTCTCCAGTTTCCATTCTGCTCCTTAGCC
TTGACATTTCTTTAACCTGACTATTGTGTGCGCGTGGAATGTCTAGACTA
TTACCTGGTGTGATGGCTATTCCTGCTTGCCAACTTGATTGCCTCTGGAA
TGATCTGAAACC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGCCGTCTTGCTCTCAAGGCAGACAGGTTA
CTGACTGAGCTGTCTTCCCAGGCTTTAGTTGATTAGAATCAGTTTAAATA
CCTCTGAAAATATTACACGAGAAAAGCACATGTGGCGGTCAGTTCAGCAA
CCCTGCCCTTTCGCTGGGTGTGAGGGAGGATGTGAGAGGGGAGGCTGCTT
CAGATGAGAGTGTTAGGCTACTGGCCTCGAGGACGGAGCAGAGTCTGAGG
AAGCAGGCGCTGTCTCTATTATAGGCGACAGGTCGTCATGAGGAGTGCTG
CAAAGAGAACATGGCACCCTGTCTCCGTATCACAGCTGCCCCCAGATTCA
GTGGCTTGACCCGCCGCTTGATGATGCTTCAAGATCTCTTGGGCTGTCTG
GTGGGTTCTTTGATCCCTCCTTGTGGATTCGCTATGCTTCCTCTTGTGTA
TTACCCGTTTTCGGATTTTTTCTCCTTTTTGTCTCCCTTTCCTTGCCTGG
TTACTGTTCCCTCCCCTTTGTTCTCACATTTTTTGTTGGTGTTCCCCCTG
CCTTTTTGTTATTTTTTCTTCCCTTTCGCCTTGCTTTGTACTTTCCCCCT
TGATATTTTTCCCCTTTTTTTTTTTCTAGATACTTTTTCTTCACCACCCC
CTATCTTTTTTTTTTTCTTCACCCTGTTTATGTTATATAACTATTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_o12.g1 MSMg01no084_o12.g1 CHROMAT_FILE:
MSMg01no084_o12.g1 PHD_FILE: MSMg01no084_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:03 2005
         (264 letters)



>mm_chr5_126085158_126085821
          Length = 664

 Score =  456 bits (236), Expect = e-133
 Identities = 257/264 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggccgtcttgctctcaaggcagacaggttactgactgagctgtcttcccaggctttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggccgtcttgctctcaaggcagacaggttactgactgagctgtcttcccaggctttagt 260

                                                                       
Query: 61  tgattagaatcagtttaaatacctctgaaaatattacacgagaaaagcacatgtggcggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgattagaatcagtttaaatacctctgaaaatattacacgagaaaagcacatgtggcggt 320

                                                                       
Query: 121 cagttcagcaaccctgccctttcgctgggtgtgagggaggatgtgagaggggaggctgct 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttcagcaaccccgccctttcgctgggtgtgagggaggatgtgagaggggaggctgct 380

                                                                       
Query: 181 tcagatgagagtgttaggctactggcctcgaggacggagcagagtctgaggaagcaggcg 240
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tcagatgagagtgctaggctactggcctcgaggacggagcagagtctgaggaagcaggtg 440

                                   
Query: 241 ctgtctctattataggcgacaggt 264
           ||||||| |  | |||||||||||
Sbjct: 441 ctgtctccaggacaggcgacaggt 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)