BAC Information

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BAC

Clone NameMSMg01-084P17
Chromosome5 (Build37)
Map Location 65,317,690 - 65,475,317
singlet/doubletdoublet
Overlap geneTlr1, Tlr6, 9130005N14Rik, Tmem156
Upstream geneAA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3
Downstream geneKlhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084P17.T7 (MSMg01no084_p17.b1)MSMg01-084P17.TJ (MSMg01no084_p17.g1)
ACCAG304690AG304691
length751752
length of high quality
(start - end)
333 (26 - 358)336 (65 - 400)
definitionCHROMAT_FILE: MSMg01no084_p17.b1 PHD_FILE: MSMg01no084_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:09 2005CHROMAT_FILE: MSMg01no084_p17.g1 PHD_FILE: MSMg01no084_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,474,999 - 65,475,317)(65,317,690 - 65,318,025)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAGAATCCGCGGAATTCACTC
TGCAGACCCCGGTGGCCTTGAACTCAGAGATCTGCTTGTCTCTGCCTCAT
GAGTGCTGGGACTAAAGGTGTGTGACACCACTGTCTGGTGTTATTTTCAC
TCTTCCATGTGCACAAAGCATCTTGTACAAACATATGCGTGATCTGTTCT
TACAGCAAAAGTTAAGGAAGGAAAATATAGCTCTTTAGTGTTGTCCTTCG
CTTCTCTTTGAAAAGGAGAAAATAATTGGCCTGCCCCTTTCTCCAACTCT
GCTTTCCTAACTCTATTTAGTATTCGGCGTACCTCCTCAGGGAAGGTGCC
AACTTGGTACTGAAGTCATTCTGCGATGCATTTGCATCTCTCAGAGTGTT
CAAGTAGAGGCCTGACTCCAGGAATATTACTGTAGGTAGTTAAATTCACA
AAGCCCTGGTTATGGAAGTGGAGAATACAGCCCGCCCCAATGCTTAAAGC
TGTTTGGGGAGGAGGAATTATTTTTTAAAAATTATACCCACGAAAGGGCT
GTCCCCCTCTACCTTAATCCCTTTTCCAAAAAAAATTAATTTAAAAATGA
AGGTTTTAAAAAACCCCTTACAACCATCCTTATTATTCAAATTTTACAGG
GTAATCTAATTCATTCTTTGGAAATATCTGGTCCTTGCCCCACTTTAATT
TGAATTAACAACTGTAACCGGGGAACAGTAAATATTTTTCTCCCCTCTCT
G
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACGTTGTTTCCACATTGTTCAGGGTAAGATTTGAG
AGCTTCGGATTCTTTCCAAGCTTTGACAAAGCACGTAAGAAATAAGAGCA
GCCCTGGTCTTCAAGCACACACTTGATGTTAGACAGTTCCAAACCGATCA
TAGTGCTGACGGACACATCCAGAAGAAAACGGAATTCTCTTTTCGACGGG
AAAACAATATGCAGAGTCTCAGTGCTAACGTGCCGAAGAGATTCGGGGTC
TTCTTTTTCCCAATAAGCATCTCCTAACACCAGCAAAACCTTACTGATGT
TCAAATGAGCAATCAGCTGCACACTTGAACTTTGTACCCGAGAACCGCTC
AACCCCAGGAACTGTAGTTGTGACATGTTGCCAAATTCTTTTGCATATAG
GCAGGGCATCCAAGGCATTAAAAGGAGAGCGTCCAAATGCTTTGAGGCTG
ACTGTTTGGGTGTCACTAAGATCACCCTTAATTTCCATGGGGGGCAAAAA
TCCCCAATATTTCCAGCTTCGGGGGTTGAATTTTGAAAAACCCTGGAATT
TTAAAAAAACCTGGGAATCCCGGTTTGCCAGGGAACATTTTATCCCGGGA
CCCCCCTCCCATTTTTTTGGGTCTCCCACCGATAATAATAATCGGTCTCC
CCAAAACTTTTCTCCCAAATACTCTCCCACACAAACCACTTTGTTGTTTC
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_p17.b1 MSMg01no084_p17.b1 CHROMAT_FILE:
MSMg01no084_p17.b1 PHD_FILE: MSMg01no084_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:09 2005
         (333 letters)



>mm_chr5_65474686_65475418
          Length = 733

 Score =  563 bits (291), Expect = e-165
 Identities = 312/319 (97%)
 Strand = Plus / Minus

                                                                       
Query: 15  ggaattcactctgcagaccccggtggccttgaactcagagatctgcttgtctctgcctca 74
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggaattcactctgcagaccagggtggccttgaactcagagatctgcttgtctctgcctca 573

                                                                       
Query: 75  tgagtgctgggactaaaggtgtgtgacaccactgtctggtgttattttcactcttccatg 134
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 572 tgagtgctgggactaaaggtgtgtgacaccactgtctggtgttattttcactcttcaatg 513

                                                                       
Query: 135 tgcacaaagcatcttgtacaaacatatgcgtgatctgttcttacagcaaaagttaaggaa 194
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 512 tgcacaaagcatcttgtacaaacatatgtgtgatctcttcttacagcaaaagttaaggaa 453

                                                                       
Query: 195 ggaaaatatagctctttagtgttgtccttcgcttctctttgaaaaggagaaaataattgg 254
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 452 ggaaaatatagctctttagtgttgtcctttgcttctctttgaaaaggagaaaataattgg 393

                                                                       
Query: 255 cctgcccctttctccaactctgctttcctaactctatttagtattcggcgtacctcctca 314
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 392 cctgcccctttctccaactctgttttcctaactctatttagtattcggcgtacctcctca 333

                              
Query: 315 gggaaggtgccaacttggt 333
           |||||||||||||||||||
Sbjct: 332 gggaaggtgccaacttggt 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no084_p17.g1 MSMg01no084_p17.g1 CHROMAT_FILE:
MSMg01no084_p17.g1 PHD_FILE: MSMg01no084_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:09 2005
         (336 letters)



>mm_chr5_65317490_65318225
          Length = 736

 Score =  627 bits (324), Expect = 0.0
 Identities = 333/336 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgttgtttccacattgttcagggtaagatttgagagcttcggattctttccaagcttt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cacgttgtttccacattgttcagggtaagatttgagagcttcagattctttccaagcttt 260

                                                                       
Query: 61  gacaaagcacgtaagaaataagagcagccctggtcttcaagcacacacttgatgttagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaaagcacgtaagaaataagagcagccctggtcttcaagcacacacttgatgttagac 320

                                                                       
Query: 121 agttccaaaccgatcatagtgctgacggacacatccagaagaaaacggaattctcttttc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttccaaaccgatcgtagtgctgacggacacatccagaagaaaacggaattctcttttc 380

                                                                       
Query: 181 gacgggaaaacaatatgcagagtctcagtgctaacgtgccgaagagattcggggtcttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacgggaaaacaatatgcagagtctcagtgctaacgtgccgaagagattcggggtcttct 440

                                                                       
Query: 241 ttttcccaataagcatctcctaacaccagcaaaaccttactgatgttcaaatgagcaatc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttccccataagcatctcctaacaccagcaaaaccttactgatgttcaaatgagcaatc 500

                                               
Query: 301 agctgcacacttgaactttgtacccgagaaccgctc 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctgcacacttgaactttgtacccgagaaccgctc 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)