BAC Information

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BAC

Clone NameMSMg01-084P18
Chromosome5 (Build37)
Map Location 114,167,066 - 114,167,598
singlet/doubletsinglet
Overlap geneLOC381707
Upstream geneMyo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1
Downstream geneD5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084P18.T7 (MSMg01no084_p18.b1)MSMg01-084P18.TJ (MSMg01no084_p18.g1)
ACCAG304692AG304693
length719707
length of high quality
(start - end)
533 (62 - 594)345 (57 - 401)
definitionCHROMAT_FILE: MSMg01no084_p18.b1 PHD_FILE: MSMg01no084_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:09 2005CHROMAT_FILE: MSMg01no084_p18.g1 PHD_FILE: MSMg01no084_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCCGCTATACGACTCCTATAGTTCGAAAATCCGCGGAATTCAGTTTC
CTAATGCCTGCTGGGAAGGAGGGAACAGCCTTCCAGCCCCTGGGATTTTA
TTGTTGATCACTTTGTGTAAGCTTGAGTCCTGGGTTGTACTTTTGAAGCA
TCTCACCAAACAGTTCCAACGCACATTTGGTCTCAAGGCCGCCTGATGTA
CCCACACTGTTAGCATTCTGTCTAAGCTCAACTCCACAGTTACCTGGCAA
CAGCCAGGGAGGCCTGACCCACTATAAAAGGGGCTGCTTGCCCCCTCCTC
GCTCTCTTGTCTTCTTGCTCCCTCTCTGTCCCCTCTCCCCTTCCCCATTC
CCTTCCCCCTCTCTCCACCTGCTCATGGCCAGCCTCTACTCCTCTACTTA
TCTCTCTCTCTCTACCTAGCTAGCTAGCTAGCTCTCTCATTCTCTCTCTC
TCTTTCTCTGCCTCCACAACCCTCTTAACTCCCTTCCCCATGCCCTGAAT
AAACTCTATTCTATACTATACCACCATGTGGCTGGTCCCTCAGGGGGAAG
GGAAGCCTTGGCATGGGCCCGCTGAAACATCCCCTTCCCTTATACCTCCA
TAGAACATATCCCCTTGCCAGGCAGTGGTAGCACACGCCTTTAATCCTAG
CACTTGGGAGGCAGAAGCAGGTGAATCTCTGAGTTTGAGGCCAGCCTGGT
CTACAGAGTGAGTCCCAGA
TGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAACATGCTCCAGACATGAGCTCAGGTCGGTCACCGATAGGCTGACA
GGTGCGGATCACGAGGAACAGTCCAGCCTGGCAGGCAGCCCACGCATGTA
GCCTTGCTGCGAATGCGCGGGCAATGCAGTAAACATCTTGGCCCTTGCAG
CCGCATCTGCTTCCCGCAGAGTTCTACATCTTCATCTGAAGGATGCTAGA
AGACTGACTTCCAGGCAGCTAGGACAAGAGTCTTAAAGCCCACACCCATA
GTGCCAGGACTTCTCCAACAAGGCCACACCTCCTAATAGTGCCACTCCCT
GGGCCAAGCATACACAAATCATCACAAACGTTAACTTGACCCAAGCTAGA
GCCATTTAGGAAGAGCATCAATTGAGAAAATGCTCCCAGCAGATTGGCCT
TGTGGGCGTTGTCTTAAGTAATGATTGACAGAGAGCCCAGATCACTATGG
GCAGTCACACTCTTGTGAATGTGGTCCTGGGTTCCATAAGAAAGCGGGCT
GAACACGACATGAGGAGCAAGCATGGCCTCTGCATCAGCTCCCGCCTCCG
GGCTCCTGCCCTGACTCCCCTCAGTGATGGGCCGTGCTGAAGAAGCACTT
GCTGCCACAGAATGCTTCCTGGTATGGTTGTTATCACAGATGTAAAAGCC
CTAAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_p18.b1 MSMg01no084_p18.b1 CHROMAT_FILE:
MSMg01no084_p18.b1 PHD_FILE: MSMg01no084_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:09 2005
         (533 letters)



>mm_chr5_114166866_114167798
          Length = 933

 Score = 1000 bits (517), Expect = 0.0
 Identities = 529/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggaaggagggaacagccttccagcccctgggattttattgttgatcactttgtgtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggaaggagggaacagccttccagcccctgggattttattgttgatcactttgtgtaag 260

                                                                       
Query: 61  cttgagtcctgggttgtacttttgaagcatctcaccaaacagttccaacgcacatttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagtcctgggttgtacttttgaagcatctcaccaaacagttccaacgcacatttggt 320

                                                                       
Query: 121 ctcaaggccgcctgatgtacccacactgttagcattctgtctaagctcaactccacagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaaggccgcctgatgtacccacactgttagcattctgtctaagctcaactccacagtt 380

                                                                       
Query: 181 acctggcaacagccagggaggcctgacccactataaaaggggctgcttgccccctcctcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctggcaacagccagggaggcctgacccactataaaaggggctgcttgccccctcctcg 440

                                                                       
Query: 241 ctctcttgtcttcttgctccctctctgtcccctctccccttccccattcccttccccctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctcttgtcttcttgctccctctctgtcccctctccccttccccattcccttccccctc 500

                                                                       
Query: 301 tctccacctgctcatggccagcctctactcctctacttatctctctctctctacctagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tctccacctgctcatggccagcctctactcctctacttatctctctctctctagctagct 560

                                                                       
Query: 361 agctagctagctctctcattctctctctctctttctctgcctccacaaccctcttaactc 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 agctagctagctctctcattctctctctctctttctctgcctccactaccctcttaactc 620

                                                                       
Query: 421 ccttccccatgccctgaataaactctattctatactataccaccatgtggctggtccctc 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccttccccatgccctgaatgaactctattctatactataccaccatgtggctggtccctc 680

                                                                
Query: 481 agggggaagggaagccttggcatgggcccgctgaaacatccccttcccttata 533
           | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggggaagggaagccttggcatgggcccgctgaaacatccccttcccttata 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)