MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-085E12
Chromosome	5 (Build37)
Map Location	142,851,234 - 142,851,417
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Sdk1, LOC666727
Downstream gene	Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809
Link	Open Mouse BAC browser

Click to get alignment info.

name	Sdk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330222 MGI:2444413
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666727 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666727
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Foxk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17425 MGI:1347488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C330006K01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231855 MGI:1924908
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D930005D10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231858 MGI:2443088
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Papolb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56522 MGI:1932115
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mmd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75104 MGI:1922354
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wipi2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74781 MGI:1923831
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc29a4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243328 MGI:2385330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnrc18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381742 MGI:3648294
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC100038954 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038954
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100041004 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041004
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 89 ESTs, 3 Proteins

name	LOC100038972 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038972
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins

name	LOC100038984 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038984
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	LOC100042525 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042525
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100038888 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp469 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231861 MGI:2448535
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666788 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666788
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 4 Proteins pseudo : _no_value

name	Fbxl18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231863 MGI:2444450
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D430018E03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:442800 MGI:3045245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042558 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042558
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Actb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11461 MGI:87904
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fscn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14086 MGI:1352745
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810055G22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108086 MGI:1344349
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667809 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667809
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins pseudo : _no_value

name	Sdk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802600 GeneID:330222 MGI:2444413
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sidekick homolog 1 (chicken) transcript_id : NM_177879.4

name	Foxk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82546825 GeneID:17425 MGI:1347488
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box K1 transcript_id : NM_199068.2

name	C330006K01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82546848 GeneID:231855 MGI:1924908
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C330006K01 gene transcript_id : NM_172725.2

name	D930005D10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82546886 GeneID:231858 MGI:2443088
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D930005D10 gene transcript_id : NM_178702.3

name	Papolb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78000206 GeneID:56522 MGI:1932115
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poly (A) polymerase beta (testis specific) transcript_id : NM_019943.2

name	Mmd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379242 GeneID:75104 MGI:1922354
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : monocyte to macrophage differentiation-associated 2 transcript_id : NM_175217.5

name	Wipi2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350392 GeneID:74781 MGI:1923831
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain, phosphoinositide interacting 2 transcript_id : NM_178398.3

name	Slc29a4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134031958 GeneID:243328 MGI:2385330
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 29 (nucleoside transporters), member 4 transcript_id : NM_146257.2

name	Tnrc18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254658 GeneID:381742 MGI:3648294
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : trinucleotide repeat containing 18 transcript_id : XM_355727.5

name	LOC100038954 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254664 GeneID:100038954
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100038954 transcript_id : XM_001471975.1

name	LOC100041004 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254668 GeneID:100041004
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 89 ESTs, 3 Proteins product : similar to pS2m transcript_id : XM_001475697.1

name	LOC100038972 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254666 GeneID:100038972
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins product : similar to TMPRSS3 protein transcript_id : XM_001472013.1

name	LOC100038984 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254674 GeneID:100038984
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : similar to testis/prostate/placenta-expressed protein, isoform 2 transcript_id : XM_001472041.1

name	LOC100038888 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254671 GeneID:100038888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038888 transcript_id : XM_001471803.1

name	Zfp469 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342462 GeneID:231861 MGI:2448535
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 469 transcript_id : NM_178242.2

name	Fbxl18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801875 GeneID:231863 MGI:2444450
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box and leucine-rich repeat protein 18 transcript_id : NM_001033312.2

name	LOC100042558 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254679 GeneID:100042558
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042558 transcript_id : XM_001478496.1

name	Actb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378181 GeneID:11461 MGI:87904
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin, beta, cytoplasmic transcript_id : NM_007393.2

name	Fscn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113680347 GeneID:14086 MGI:1352745
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus) transcript_id : NM_007984.2

name	2810055G22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46391096 GeneID:108086 MGI:1344349
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810055G22 gene transcript_id : NM_080561.3

name	Sdk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39979624 GeneID:330222 MGI:2444413
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 exception : mismatches in translation product : sidekick 1 protein_id : NP_808547.2

name	Foxk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82546826 CCDS:CCDS19826.1 GeneID:17425 MGI:1347488
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0006777 - Mo-molybdopterin cofactor biosynthesis [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0048637 - skeletal muscle development [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : myocyte nuclear factor product : forkhead box K1 protein_id : NP_951031.2

name	C330006K01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82546849 GeneID:231855 MGI:1924908
definition	codon_start : 1 product : hypothetical protein LOC231855 protein_id : NP_766313.2

name	D930005D10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82546887 CCDS:CCDS19827.1 GeneID:231858 MGI:2443088
definition	GO_component : GO:0016459 - myosin [Evidence IEA] GO_function : GO:0003774 - motor activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : hypothetical protein LOC231858 protein_id : NP_848817.2

name	Papolb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910588 GeneID:56522 MGI:1932115
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0004652 - polynucleotide adenylyltransferase activity [Evidence ISS] [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : testis-specific poly(A) polymerase product : poly (A) polymerase beta (testis specific) protein_id : NP_064327.1

name	Mmd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28202005 GeneID:75104 MGI:1922354
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0019835 - cytolysis [Evidence IEA] codon_start : 1 product : monocyte-to-macrophage differentiation factor 2 protein_id : NP_780426.1

name	Wipi2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30409972 CCDS:CCDS19828.1 GeneID:74781 MGI:1923831
definition	codon_start : 1 product : WD repeat domain, phosphoinositide interacting 2 protein_id : NP_848485.1

name	Slc29a4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122849 GeneID:243328 MGI:2385330
definition	codon_start : 1 product : solute carrier family 29 (nucleoside transporters), member 4 protein_id : NP_666369.1

name	Tnrc18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254659 GeneID:381742 MGI:3648294
definition	codon_start : 1 product : similar to Tnrc18 protein protein_id : XP_355727.5

name	LOC100038954 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254665 GeneID:100038954
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472025.1

name	LOC100041004 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254669 GeneID:100041004
definition	codon_start : 1 product : similar to pS2m protein_id : XP_001475747.1

name	LOC100038972 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254667 GeneID:100038972
definition	codon_start : 1 product : similar to TMPRSS3 protein protein_id : XP_001472063.1

name	LOC100038984 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254675 GeneID:100038984
definition	codon_start : 1 product : similar to testis/prostate/placenta-expressed protein, isoform 2 protein_id : XP_001472091.1

name	LOC100038888 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254672 GeneID:100038888
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001471853.1

name	Zfp469 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30142681 CCDS:CCDS19830.1 GeneID:231861 MGI:2448535
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : zinc finger protein 469 protein_id : NP_839973.1

name	Fbxl18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677482 CCDS:CCDS19831.1 GeneID:231863 MGI:2444450
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation product : F-box and leucine-rich repeat protein 18 protein_id : NP_001028484.1

name	LOC100042558 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254680 GeneID:100042558
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478546.1

name	Actb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671509 CCDS:CCDS19833.1 GeneID:11461 MGI:87904
definition	GO_component : GO:0005884 - actin filament [Evidence IEA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005829 - cytosol [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] codon_start : 1 note : melanoma X-actin; A-X actin-like protein product : actin, beta, cytoplasmic protein_id : NP_031419.1

name	Fscn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113680348 CCDS:CCDS19834.1 GeneID:14086 MGI:1352745
definition	GO_component : GO:0030175 - filopodium [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0051015 - actin filament binding [Evidence IEA]; GO:0030674 - protein binding, bridging [Evidence IEA] codon_start : 1 note : fascin 1 product : fascin homolog 1, actin bundling protein protein_id : NP_032010.2

name	2810055G22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46358407 GeneID:108086 MGI:1344349
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : E3 ubiquitin ligase product : ubiquitin conjugating enzyme 7 interacting protein 1 protein_id : NP_542128.2

name	LOC666727 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666727
definition	number : 1 pseudo : _no_value

name	LOC666727 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666727
definition	number : 2 pseudo : _no_value

name	LOC100042525 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042525
definition	number : 1 pseudo : _no_value

name	LOC666788 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254676 GeneID:666788
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 4 Proteins product : similar to Mitochondrial ribosomal protein L12 pseudo : _no_value transcript_id : XR_030621.1

name	D430018E03Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149254673 GeneID:442800 MGI:3045245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D430018E03 gene transcript_id : XR_035135.1

name	LOC667809 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254681 GeneID:667809
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins product : similar to rat ribosomal protein L9 homologue pseudo : _no_value transcript_id : XR_033764.1

clone name	MSMg01-409A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351G13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-108M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476K16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-418I11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-474I13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-493A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045H08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-268O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034I10
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-085E12.T7 (MSMg01no085_e12.b1)	MSMg01-085E12.TJ (MSMg01no085_e12.g1)
ACC	AG304913	AG304914
length	1,270	1,346
length of high quality (start - end)	145 (119 - 263)	184 (123 - 306)
definition	CHROMAT_FILE: MSMg01no085_e12.b1 PHD_FILE: MSMg01no085_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:51 2005	CHROMAT_FILE: MSMg01no085_e12.g1 PHD_FILE: MSMg01no085_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:51 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	GGTCCTATTATGTCXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTAT CTGTTTAACTCACCCTTTAAGGCCTGGCGAGATGGCTCAGCGGTTAGGTT AACCTTTAAGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACC GCATGGTGGCTCACAACCTTCTGTAACGCGATCTGATGCCCTCTTCTGAT GTGTCTGAAGACAGCTACAATGTACTTGTAGAAAACAAATAAATCATAAA ATAAAATTAATACAGAAAAAGAAAAAAAAAAAACCTCAGGCTTTGGGCTG CCATGTCTACAGCAGCGTGGTTATCGAGTCACACGACCACAATGCAATCT GCTGCCCTGAGATCGTCATCATACTCTGTCTCACCCACCACCATCTTTTT TTTAACCGCATTGTCCTTCCACCATAAGCCACTGTGGATCCTAGCCTGAG TTTGTTTCACACGTGTTCCCAGACCTCATGCATCATTCATAGGAGTGCCT GATATCTGGTCCAACCATTTCTATCTCTTGAGTTCCACACTAGCCTTCAC CGCATAACAAGCCTAGGTCACACAATGTCTTCATGCAACCATGTCCTTTT ATTCTTCTTAATTCATTTACTTTAAATTGTTGTCTCCCCCCCTGTTCTCC TCTTACATATAGTCTTCTTTATCTCCTCTTTTTTTCTCCTCTAACATCTT CTTTTTTTCATCTTCTTTTTTTCTTATTTACTTCTACTTTTCTTATATTT ATTTTCTTCTCTTTTCTTGATTTTTTTCTTCCTTTTTCTTTAATTATTAT TTTAACTATTCTTTTTTCTTCTTTTTTTATTTTTCTTTTTTTATTTTTTT ACCATTTTATTTTTTTTTTTTTCTTATTTTTTTTTATTTTTTCTTTTATC TTTTTTATCATTTTTTTTTTTACATTTTCAATATAGTTTTCTTTTTCATA TCATTTTCTTTTATTTTTTTTCTTAATTTTATCTTTTATTTAATTATTTT ATGTTTATTTCTATTTTTTTTTTTTATAATTTCTTTTATTTCTCTTCTTA TATTATATTCCATGTTATTATAATCTTTTCTTTCTTATTTCTTTTTATTG TATTATTCTTCTATTTACTTTATTCTTTTTTATTTTTCACTTCTTCTCAA TTATTTTTTGCTCTTATCTATTATTATTTATCATTGTATATATTATTACT ATTTTATATTCTTCTTTATCACCATTCTTATTTGATATTATCAATCTTGT ACATACTATATCCTCTCTTT	NTTAGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXCTTTTAAGTTAGACAGAGACACATAGTGAGAGCCTG ATTCACCTTTAAAATATCCCACATGCAACATATGTTAATCCTCTCCACTC CAGGTCTCCTACAGCTCCCCCTACCCCTCCAACAACCCCCTCCCACCTCT ACCCACTCCTTTATGCCCTTTCCTTATATTTTGTAACCCACTGTGGCTAT TTGAATATGAATGGTCCCCATAGGTTCACATGTTTGAATGCTCAGTCATC TGGGAATGGCACTGCTTGCTAAGGATTAGGAGGCGTGGCCTTGCTGGCGG AAGCCTGTCATTGGTGGTGGGTTTTGATGCTTCAAAAGTCCAATGTTTTT TTTTACCCGATCTGTCTTCCTACTGATTTGATGATTCAGGCTCTTTCTCC TATCTTCTGTCCGCCTGGTTGTCATTCTGTCCTGTTGATCATGGACGTTT CCCTCTTGATCTGTTTCTTAGTCTTCTCTTTATATGCCTTTCCTTATTTT AATATTACTTGTTCTTTTGTATTGTTGTTTTATTCTGTTCCGCTTCTCCT TTTGTTAATTTTTTGGTATTTCTGTCATCTATATTCTCTTTTTTCCTTGT CTCTCTTTTATATTTTTTTTTTCTTTTTACCATATTTTTTCTCTTTTTTT ATTTTCTTTTATCTTTTCTTTTTCCTAATTCATTTTTTGTTATTCCTCTA TATTTCTCTCTTCTCTTTTATTTTTTTTCTCTTATTTTTTTCTTTTATTT TTTTTTTTTTTTCTTTTTATTTTTTCTTTTTATTTTTTTCTTTTTTCTTT GTATTTTTTTATATCTTTTATTATCTCTTTCTTTTTTTCTACTCTCTCTT ATCCTTTTTTCTTTATTTCTCTTAATTTATTTTCTTTTTTTAACTTTATT TCCTTTTTTACTTTTTATTTTTCTACCTCTCCTTTCTTTTTATATTTATT CTTACTTTCTCTTACTATTATATATTACCTATTTACTTTATTTTTCTTTT TACTATTTATCTTATTTTTTTCTTGTATTCTTTATATTCTTTCTCTTTTT TTCTTATCTATTATGTATTTTTTCTTTTTTATCTTCTCATTTATTCTTAT AACATCTACTCTATCTTATATCTCTTCTATTATTTGATCTCTTAATTACT ATTTTTTCATCTCTTATTATTCTTCTATTCCTTACCTTCATCTCTTCTTC TCACTATACTTACATTTCAATTAACAATCTCCTACTTATTCTTTACTATT TTCTATTTTAATGTCACTTTAACTATTTTTTCTCTCTTCTTTATGT
quality values	Open. Hide. 7 7 6 6 6 6 8 11 6 6 6 6 7 7 8 8 8 8 8 13 16 9 8 8 10 12 12 19 19 35 28 28 28 28 30 33 33 37 37 37 33 39 32 32 17 18 10 10 11 21 21 40 23 25 11 11 11 23 16 15 8 8 8 10 11 17 13 14 12 12 14 11 10 10 10 10 11 17 23 34 33 33 33 33 33 36 44 36 36 25 25 28 33 37 41 39 32 28 22 10 10 13 9 8 8 8 8 8 8 8 8 10 12 16 13 20 20 16 16 16 27 29 40 40 39 39 47 47 47 43 43 39 48 48 48 48 48 54 54 59 57 48 46 43 39 39 35 37 37 39 39 35 32 28 21 17 21 21 29 29 39 47 47 47 47 39 39 48 48 37 37 37 29 16 8 8 8 8 8 8 20 28 34 41 46 43 43 43 37 37 43 43 43 48 57 57 57 57 47 47 43 34 34 23 23 30 34 34 40 30 30 33 33 36 36 26 29 15 15 16 29 30 43 43 43 43 48 32 38 19 19 15 28 26 32 24 18 12 12 12 25 24 42 42 35 35 35 35 35 35 42 41 28 23 23 28 44 28 12 10 10 10 10 10 16 19 18 16 16 28 28 18 21 16 17 17 20 24 27 29 29 29 29 35 43 32 24 18 13 13 15 24 38 44 33 29 29 28 43 36 42 37 36 24 28 13 11 11 19 12 13 12 12 12 12 11 12 12 24 12 10 8 8 8 8 8 10 14 23 22 11 11 9 10 14 15 15 24 11 11 11 18 25 30 30 25 25 19 32 28 23 23 23 36 36 36 36 19 22 12 15 15 31 32 39 24 23 12 11 15 12 21 24 28 20 20 24 34 30 30 19 19 14 19 15 18 17 15 10 19 19 23 19 18 18 18 20 16 16 19 10 8 10 10 11 16 18 20 32 32 34 28 28 32 32 35 32 24 21 14 14 15 12 8 8 8 8 8 9 9 9 13 15 24 27 17 15 13 13 10 10 10 11 11 11 12 12 12 11 10 8 11 8 8 8 18 10 10 10 10 12 12 11 11 12 18 21 28 18 18 11 11 11 10 10 10 12 10 9 9 9 9 10 10 10 10 9 9 9 9 9 10 11 12 12 12 19 18 22 28 27 24 15 15 22 28 28 20 17 14 10 10 10 12 8 8 8 8 8 10 10 15 10 10 10 15 11 15 14 14 12 15 23 15 15 11 13 11 18 17 17 11 11 11 18 18 11 11 11 13 13 15 12 19 12 12 12 12 11 11 11 12 11 12 11 11 11 12 12 12 16 11 11 11 11 11 8 8 8 8 8 10 10 10 10 11 12 10 10 10 10 10 10 11 10 10 10 15 13 14 12 18 11 11 11 11 16 19 18 12 11 13 10 10 10 15 10 10 9 9 10 12 15 8 8 8 8 8 8 8 8 8 8 10 17 14 10 10 10 10 10 12 12 14 8 8 6 6 8 8 9 10 10 8 8 8 8 15 8 11 11 11 11 11 11 11 10 8 8 6 6 8 8 8 10 6 6 8 8 10 9 11 10 10 8 8 8 8 8 8 8 8 8 8 8 10 10 10 8 8 8 10 10 10 12 10 10 8 8 8 8 10 8 12 6 7 8 10 12 15 11 9 9 9 12 10 10 8 8 6 6 6 8 8 8 6 6 10 10 11 10 10 10 10 13 9 9 9 9 9 9 9 9 8 8 6 7 6 6 8 13 13 13 11 8 8 9 9 9 10 10 21 16 15 11 15 10 12 9 8 8 6 6 10 8 9 9 12 8 8 8 8 8 8 8 6 6 6 6 8 8 12 13 10 8 8 8 8 10 8 9 9 9 9 9 10 11 7 6 8 8 10 11 10 12 10 10 10 11 10 10 10 11 12 6 6 6 6 9 10 10 8 8 8 13 13 10 10 10 10 10 10 10 10 10 8 10 12 12 8 8 11 13 12 12 10 15 11 12 11 11 13 10 10 10 10 10 15 15 19 15 9 8 10 8 11 10 11 11 11 11 10 10 10 10 10 10 10 10 10 9 9 9 9 9 9 9 9 9 9 10 12 19 19 10 10 9 9 9 10 10 8 8 6 6 8 8 10 9 8 8 8 8 8 6 6 8 8 8 8 8 8 10 8 10 8 8 8 8 8 8 8 8 8 8 12 10 10 10 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 6 6 10 8 6 6 8 8 6 6 6 6 6 8 8 8 8 6 8 8 8 11 9 9 8 8 8 6 6 8 8 9 9 15 8 8 8 6 8 8 8 10 11 15 19 14 18 18 14 13 9 8 8 8 8 8 8 9 10 12 9 10 10 10 10 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 10 8 10 8 8 8 8 8 8 8 10 8 8 10 10 11 11 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 10 10 10 10 10 11 15 15 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 11 7 6 8 8 8 8 8 10 8 6 6 13 10 13 10 12 14 10 10 10 9 8 8 8 8 8 8 6 6 8 8 8 8 8 10 9 11 9 9 10 10 10 8 8 8 8 15 14 14 11 8 8 8 8 8 8 10 10 10 10 11 12 8 8 8 8 7 7 8 8 8 8 8 8 8 8 8 8 6 6 6 8 8 8 7 7 10 12 11 8 8 8 8 8 10 10 10 8 8 9 8 8 6 6 6 6 8 8 8 8 8 6 8 6 6 8 10 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 6 6 8 8 9 9 11 11 11 11	Open. Hide. 0 3 6 6 6 6 7 7 6 7 7 7 9 8 8 8 8 8 13 16 18 9 8 10 8 8 8 11 15 23 23 10 10 13 13 13 13 8 12 12 19 19 24 22 28 29 34 36 33 30 30 30 39 37 44 41 41 37 37 27 27 9 9 9 9 9 9 12 11 10 10 10 9 11 11 12 12 12 15 30 32 43 43 36 32 28 34 33 35 34 28 33 36 33 37 37 37 37 37 37 37 23 23 9 9 9 12 12 11 12 17 19 23 18 22 19 20 8 8 8 8 8 10 16 32 32 37 30 30 30 40 43 40 39 39 39 39 48 47 54 54 48 48 47 42 42 47 47 47 47 47 48 48 47 47 47 47 47 47 42 41 37 37 43 43 43 44 42 48 41 41 41 41 41 47 48 48 47 57 44 47 43 43 43 47 42 43 42 39 41 57 44 47 47 47 50 54 57 57 57 57 57 57 50 50 52 52 52 52 57 57 57 52 52 52 57 57 57 57 57 57 57 57 57 54 54 54 57 57 57 50 43 37 37 37 43 43 57 57 57 57 57 57 57 35 35 35 43 57 57 57 57 57 52 57 57 57 52 52 52 43 43 43 43 57 52 57 57 57 57 57 52 52 52 52 38 36 24 24 24 36 36 52 57 57 57 43 36 23 23 32 43 38 38 23 23 23 32 43 50 43 43 27 23 18 27 18 13 13 18 18 27 15 12 17 30 21 28 10 10 10 17 16 17 17 24 24 12 12 12 15 32 19 19 11 12 24 18 18 24 32 28 23 19 13 11 11 11 11 16 16 23 28 30 40 36 31 32 30 18 24 12 9 9 11 13 19 16 18 13 13 13 28 23 32 23 20 16 12 8 8 8 12 10 15 12 18 11 11 12 10 10 10 10 10 10 11 17 19 22 19 15 12 11 11 11 10 8 8 8 8 13 15 15 10 10 10 13 13 15 15 10 10 12 11 11 9 10 9 12 10 10 10 6 6 8 8 12 12 9 9 10 10 10 10 16 13 13 10 9 9 9 9 9 8 8 8 10 15 10 10 20 23 28 16 16 10 11 12 11 11 9 9 8 12 8 8 8 8 8 8 10 11 8 10 9 10 10 8 8 8 11 10 11 10 10 10 8 10 8 8 8 8 8 10 12 10 10 10 8 9 9 13 10 9 9 9 12 8 8 8 8 8 8 6 7 7 9 8 10 10 8 8 8 8 8 8 10 10 8 6 6 8 8 8 9 9 9 9 10 10 8 8 8 8 8 8 11 10 10 9 13 9 10 10 10 12 11 12 11 8 8 8 8 8 8 7 7 8 10 10 9 9 8 8 8 8 8 8 11 8 8 6 6 8 8 8 8 6 6 8 8 13 12 9 8 8 8 8 13 8 9 8 8 7 7 8 10 10 10 9 9 9 6 6 6 6 8 8 8 8 8 8 8 6 6 8 8 8 8 10 10 13 10 10 10 10 10 9 9 9 9 9 8 10 12 10 8 8 8 8 8 11 11 15 12 14 10 10 10 13 12 14 12 16 10 8 6 6 8 8 8 6 6 8 8 9 10 9 9 9 8 8 9 9 10 10 10 11 7 7 8 10 10 10 10 10 8 8 8 8 8 8 8 10 10 10 8 8 8 8 8 8 9 12 8 8 8 8 8 8 8 8 10 8 10 10 9 9 9 9 8 10 10 15 13 10 9 8 8 8 8 8 9 9 10 9 8 8 6 6 7 7 12 7 7 8 8 8 8 8 8 10 10 8 8 8 8 10 10 10 8 8 8 9 10 11 11 8 8 8 8 8 8 14 13 14 10 13 11 10 12 9 9 10 12 12 15 16 14 16 10 10 10 13 10 6 8 8 8 8 8 10 13 15 17 19 24 10 10 9 9 9 10 11 17 10 8 8 7 7 8 8 10 11 11 11 11 13 8 8 6 6 10 8 10 10 10 13 10 8 8 8 8 8 8 8 8 7 8 9 11 11 11 15 11 11 8 8 8 12 12 8 10 8 9 9 9 11 12 12 11 9 10 8 8 8 8 8 8 8 8 10 10 13 13 14 18 10 10 9 6 8 6 8 10 13 8 8 8 8 8 10 8 9 9 9 9 10 12 15 12 13 9 8 8 8 10 9 9 9 8 8 10 8 12 6 7 8 8 10 10 10 11 12 12 12 11 10 10 10 10 10 8 8 6 7 8 10 8 8 8 8 8 8 8 8 10 10 8 8 6 6 10 8 8 8 8 10 10 11 13 13 17 12 10 10 10 9 9 9 9 9 11 11 8 10 8 8 8 8 8 8 10 9 10 8 8 8 6 6 8 6 6 10 7 6 8 8 8 6 6 8 8 10 10 10 11 11 10 10 14 14 12 13 7 7 8 10 10 8 8 8 8 8 8 8 8 8 8 6 7 7 7 10 10 8 9 8 8 8 8 8 8 9 9 9 8 8 6 6 8 8 8 8 8 13 8 8 8 8 6 6 8 8 10 10 10 8 8 8 8 8 8 9 8 8 6 6 8 8 6 6 8 8 6 6 8 10 11 12 8 8 6 6 10 8 10 16 12 11 10 8 8 10 10 9 9 10 8 10 7 6 8 8 8 8 7 6 8 8 8 6 8 8 8 11 8 8 8 8 6 6 8 6 6 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 6 6 6 6 8 8 8 9 9 9 9 8 8 8 6 6 6 8 10 8 10 9 10 10 10 10 8 8 8 8 8 8 8 8 8 10 10 10 12 10 10 10 10 10 8 9 8 8 10 8 8 8 8 11 7 9 11 11 10 9 9 9 13 12 8 8 8 10 8 12 8 10 11 11 10 11 11 8 9 9 9 9 9 11 11 8 8 6 7 8 8 8 10 8 6 6 8 8 6 6 8 8 8 8 11 10 11 10 8 6 6 8 8 8 10 17 12 9 9 9 11 10 14 14 10 8 8 8 8 8 7 9 9 10 15 8 8 8 8 8 6 6 8 8 10 10 9 8 8 8 6 8 8 10 7 6 8 8 8 8 8 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no085_e12.g1 MSMg01no085_e12.g1 CHROMAT_FILE:
MSMg01no085_e12.g1 PHD_FILE: MSMg01no085_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:51 2005
         (184 letters)



>mm_chr5_142851099_142851682
          Length = 584

 Score =  348 bits (180), Expect = e-100
 Identities = 183/184 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcaacatatgttaatcctctccactccaggtctcctacagctccccctacccctccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atgcaacatatgttaatcctctccactccaggtctcctacagctccccctacccctccaa 260

                                                                       
Query: 61  caaccccctcccacctctacccactcctttatgccctttccttatattttgtaacccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 caaccccctcccacctctacccactcctttatgccctttccttatattttgtaacccact 200

                                                                       
Query: 121 gtggctatttgaatatgaatggtccccataggttcacatgtttgaatgctcagtcatctg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 199 gtggctatttgaatatgaatggtccccataggttcatatgtttgaatgctcagtcatctg 140

               
Query: 181 ggaa 184
           ||||
Sbjct: 139 ggaa 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information