Query= MSMg01no087_h17.b1 MSMg01no087_h17.b1 CHROMAT_FILE:
MSMg01no087_h17.b1 PHD_FILE: MSMg01no087_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:37 2005
(481 letters)
>mm_chr5_81623417_81624293
Length = 877
Score = 810 bits (419), Expect = 0.0
Identities = 464/481 (96%), Gaps = 4/481 (0%)
Strand = Plus / Minus
Query: 1 acattccatctaggaagcaaaccgagacagagacacacaaggagaagacacacctatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acattccatctaggaagcaaaccgagacagagacacacaaggagaagacacacctatatg 618
Query: 61 gagatgtacattttatatacttataaactacacggtaactgcctattttctataggacat 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 617 gagatgtacattttatatacttataaactacac----actgcctattttctataggacat 562
Query: 121 gcacacattttatacttagctaaaatccccactgtgtgacaaacatttcatactgtcctt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 gcacacattttatacttagctaaaatccccactgtgtgacaaacatttcatattgtcctt 502
Query: 181 taaacttttaaaatagtcatctgatatttgtctggataattttatcttacaatataaagg 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 501 taaacttttaaaatagtcatctgatatttgtctggatacttttatcttacaatataaatg 442
Query: 241 gaaggttgagtaataaattgataactgtattccatgttagttccgattctataattcaag 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggttgagtaataaattgagaactgtattccatgttagttccgattctataattcaag 382
Query: 301 cttctcaaatagcatcatattatccctcaccatctttgttgagaaatttaaattgaaggg 360
|||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 381 cttctcaaatagcatcgtattattcctcacaatctttgttgagaaatttaaattgaaggg 322
Query: 361 aaatgagctcccaaagatcaattattcagaagataatctcagaaattcatgacacttgtt 420
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgagctcccaaaaatcgattattcagaagataatctcagaaattcatgacacttgtt 262
Query: 421 gctcttacaggtagctttacactttgagtgttaaacaatatatgccccaaataacccagt 480
||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 261 gctcttagaggtagctttacactttgagagttaagcaatatatcccccaaataacccagt 202
Query: 481 a 481
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 877
Length adjustment: 10
Effective length of query: 471
Effective length of database: 867
Effective search space: 408357
Effective search space used: 408357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no087_h17.g1 MSMg01no087_h17.g1 CHROMAT_FILE:
MSMg01no087_h17.g1 PHD_FILE: MSMg01no087_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:37 2005
(281 letters)
>mm_chr5_81493919_81494599
Length = 681
Score = 528 bits (273), Expect = e-154
Identities = 279/281 (99%)
Strand = Plus / Plus
Query: 1 aaatccgcctacctctgcctcccaagtgctgggattaaatgtgtgcaccaccacacccag 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatccgcctacctctgcctcccgagtgctgggattaaatgtgtgcaccaccacacccag 260
Query: 61 ctatttcaccattcttatattctgatttatatttaaaacaaaaggacacacttgatattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatttcaccattcttatattctgatttatatttaaaacaaaaggacacacttgatattc 320
Query: 121 taaacagtgactaatgacctttccggaagcttggcctcaagaataacatctgaaacgtcc 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacagtgactaatgacctttccagaagcttggcctcaagaataacatctgaaacgtcc 380
Query: 181 tctaaaccaaggtctggttaagtcaccaaggaatattccagtgaaacaattgtataaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaaaccaaggtctggttaagtcaccaaggaatattccagtgaaacaattgtataaatt 440
Query: 241 ttcatgaacattagtctagcagtgcagacaacaacccagaa 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatgaacattagtctagcagtgcagacaacaacccagaa 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
