Query= MSMg01no087_k18.b1 MSMg01no087_k18.b1 CHROMAT_FILE:
MSMg01no087_k18.b1 PHD_FILE: MSMg01no087_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:53 2005
(451 letters)
>mm_chr5_98489497_98490347
Length = 851
Score = 605 bits (313), Expect = e-177
Identities = 316/317 (99%)
Strand = Plus / Minus
Query: 135 ttaattaatttactttttattgattctttgtggatttcacatcatgtatcccgatccact 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ttaattaatttactttttattgattctttgtggatttcacatcatgtatcccgatccact 792
Query: 195 tatctcatgcttgagttccagtcctgacttcctttggtaatgaacagcaatgtggaagtg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tatctcatgcttgagttccagtcctgacttcctttggtaatgaacagcaatgtggaagtg 732
Query: 255 taagccgaataaaccctttcctccccaacttgcttcttggtcatgatgtttgtgcaggaa 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 taagccgaataaaccctttcctccccaacttgcttcttggtcatgatgtttgtgcaggaa 672
Query: 315 tagaaaccctgactaagacactcatgaagtggaaaatggggatcccaagtttctaggcct 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tagaaaccctgactaagacactcatgaagtggaaaatggggatcccaagtttctaggcct 612
Query: 375 gagaaatgcccagacatttgtaatttcacaggggtgccaggaatgaaggcatatctgctc 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gagaaatgcccagacatttgtaatttcacaggggtgccaggaatgaaggcatatctgctc 552
Query: 435 ttgcaacctctccgtgc 451
|||||||||||| ||||
Sbjct: 551 ttgcaacctctctgtgc 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no087_k18.g1 MSMg01no087_k18.g1 CHROMAT_FILE:
MSMg01no087_k18.g1 PHD_FILE: MSMg01no087_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:53 2005
(639 letters)
>mm_chr5_98415968_98417012
Length = 1045
Score = 1089 bits (563), Expect = 0.0
Identities = 624/647 (96%), Gaps = 10/647 (1%)
Strand = Plus / Plus
Query: 1 tgctgccca-aatgagtacattatcttgtattccatttgacactcg----ggtctttata 55
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tgctgcccacaatgagtacattatcttgtattccatttgacactcactcaggtctttata 260
Query: 56 gccactgataaataacccaaaataaccaaacatgatgacactgttgccaaggaacagtca 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccactgataaataacccaaaataaccaaacatgatgacactgttgccaaggaacagtca 320
Query: 116 ctttcagagaaaaaa--tagatcttatgacatattcaaaatatgtattttgtatatggag 173
||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 321 ctttcagagaaaaaaaatagatcttatgacatattaaaaatatgtattgtgtatatggag 380
Query: 174 ctttgcatattttgattaaggtcatataacttcctgaataagtctacatattagaggcat 233
||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgcataatt-gattaagatcatataacttcctgaataagtctacatattagaggcat 439
Query: 234 attgtagtatccagtaggagccacataaagtaacatccatattatgaactgaaaactata 293
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 attgtagtatccagtaggagacacataaagtaaaatccatattatgaactgaaaactata 499
Query: 294 tgatgtagttaatgagttttttttttctggcatttaggacaacatagggctgtttactga 353
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 tgatgtagttaatgaggtttttttt-ctggcatttaggacaacatagggctgtttactga 558
Query: 354 aaggatatacgatatacccaagatgaacatttcacatggaataaattcatatggggcatg 413
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaggatatacaatatacccaagatgaacatttcacatggaataaattcatatggggcatg 618
Query: 414 aagtcaaattattacttacaacctaagtgttttctaaacttatgatagcaatgtaagaaa 473
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct: 619 aagtcaaattattacttacaacctaagtgttttcaaaacttatgattgcaatgtaaaaaa 678
Query: 474 tagctcagctcattatgatttgaatatcaaatatccagtttgggaaaaaaaa-gatatca 532
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 679 tagctcagctcattatgatttgaatatcaaatatccagtttggaaaaaaaaaagatatca 738
Query: 533 tgacctctcaaaaaccaatataagtcaaagcagatttaaaagtcgctatatttttcttat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgacctctcaaaaaccaatataagtcaaagcagatttaaaagtcgctatatttttcttat 798
Query: 593 ttctaaatagagtattccataaaaatgtaccgaataattttaaatga 639
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttctaaatagagtattccataaaaatgtaccgaataattttaaatga 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1045
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1035
Effective search space: 651015
Effective search space used: 651015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
