Query= MSMg01no087_l01.b1 MSMg01no087_l01.b1 CHROMAT_FILE:
MSMg01no087_l01.b1 PHD_FILE: MSMg01no087_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:54 2005
(267 letters)
>mm_chr5_119936798_119937462
Length = 665
Score = 484 bits (250), Expect = e-141
Identities = 260/264 (98%), Gaps = 4/264 (1%)
Strand = Plus / Minus
Query: 5 gaattccatgttctccg-aacctcagatgcccctttgagtgtgacttgccccgagtcaaa 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaattccatgttct--gtaacctcagatgcccctttgagtgtgacttgccccgagtcaaa 408
Query: 64 tgatacatccgactcgaaccactgggctcgcccctcctcctggaggcgattgaaatgatg 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgatacatccgact-gaaccactgggctcgcccctcctcctggaggcgattgaaatgatg 349
Query: 124 atggtggttggcatctgggatgtacccctgttcaactcgatggctagctggggcagaggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atggtggttggcatctgggatgtacccctgttcaactcgatggctagctggggcagaggt 289
Query: 184 cagcagctggggagtctctgtatctcctctctcctgagtggaaggctcccagactgactt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cagcagctggggagtctctgtatctcctctctcctgagtggaaggctcccagactgactt 229
Query: 244 cgttttcagcattttgagtaaagg 267
||||||||||||||||||||||||
Sbjct: 228 cgttttcagcattttgagtaaagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 665
Length adjustment: 9
Effective length of query: 258
Effective length of database: 656
Effective search space: 169248
Effective search space used: 169248
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no087_l01.g1 MSMg01no087_l01.g1 CHROMAT_FILE:
MSMg01no087_l01.g1 PHD_FILE: MSMg01no087_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:54 2005
(218 letters)
>mm_chr5_119872014_119872631
Length = 618
Score = 362 bits (187), Expect = e-104
Identities = 211/219 (96%), Gaps = 2/219 (0%)
Strand = Plus / Plus
Query: 1 agagcctt-actcaaagcagggctcttagatttctgcacctggacgagggcccgtggtga 59
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 201 agagccttaactcaaagcagggctcttagatttctgcacctggaagacggcccgtggtga 260
Query: 60 acaggagtgagcccttgtcattggggaagggaaattggtgtgaaattaacaaggtcgtga 119
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggagtgagcccttgtcatcagggaagggaaattggtgtgaaattaacaaggtcgtga 320
Query: 120 tccagctctctgggaacctaggctcccaattttctgccttaatgagatttttttcctcat 179
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tccagctct-tgggaacctgggctcccaattttctgccttaatgagatttttttccccat 379
Query: 180 actttgcctgtcccgcatcatgtctttcaaaaaactgaa 218
|||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actttgcctgtcccgcatcatgtctttcaaaaaactgaa 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space: 127281
Effective search space used: 127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
