BAC Information

Click to search

BAC

Clone NameMSMg01-087M12
Chromosome5 (Build37)
Map Location 144,423,838 - 144,525,550
singlet/doubletdoublet
Overlap genePscd3, Usp42
Upstream geneLOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik
Downstream geneEif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087M12.T7 (MSMg01no087_m12.b1)MSMg01-087M12.TJ (MSMg01no087_m12.g1)
ACCAG306709AG306710
length715699
length of high quality
(start - end)
245 (73 - 317)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no087_m12.b1 PHD_FILE: MSMg01no087_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:02 2005CHROMAT_FILE: MSMg01no087_m12.g1 PHD_FILE: MSMg01no087_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,423,838 - 144,424,082)(144,525,268 - 144,525,550)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATCATTCTGTTTGGTGCCACATGCTTTTATTTGCTGAGCCATC
TTACTGGCCTTCCAGGTGCTACTTTTCGTGCCATCTAATGTCTCCTATAG
GTTGCCCTTTCACACTGTAACACATGCATACCCTCCCATATATACAATAT
AAAATATAGCACGGCCCCAGACTCACTTTGTAGACCAGGCTGGCCTCAAA
CTCACACTATCTCTTGCCTCTGCTCTACCGAGTGCTGAGATTAAAGGTGT
CCACACCGTACTACGTGTATGTCAAGCCATGGTGGAGTGTCATCACAGTT
AGGCAGGCATAGCACCTCACCAACCCACCTGTTCTCTCTAAGGCTCGAGA
TTCCTTTCTGCACCGCGCCCTTCTACTGGTCTTCAAGGGGAGCTCTGTCC
CTGCAAAATGCAGCTTGCTTTTCCTTTTGTTCAATAATGTCTCAGATTCC
CCTTAGTTTCCAAAGGATTATCTTCGTCAGACGCGCTGATGCCGATAGCT
CTTTCTTACTTCATTTGACCAATGCTGTGCTATTTCCACCCACCTTCTAC
CCTCTGCTGACAACCCTGTTTATTCGCATTTTTGCCCCCCTTTAGCCACT
ATATTTTCTCCCCCTGCCAGCACACCTTTTAATTTTTCCTCCCCCCCCCC
AAAAGCAGTATCTAT
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCAATAGTCTCCGAGTTTCTTTCATCTA
TTTCTTGAGGTGAGTTAAGACTTTTGGCTTATCATCTGTGTGTCCTCATG
CCACTTTCCTAGACACCTGTACTTGCTAAGGATGGGATTGAAGGTGGGAT
GGTAATAGCCCTGGGAGGGGACCAGAAGGAAACTTGGGAGATGGTTCTAC
TGCCACAGATCCTACCCAGAGAAGGGGGTGCCCCATGGCTAGGCAGGGCC
AAGGGTGAGCACCATGTCTGTCTGATGCAGCACAACACAGGTTGATGGGA
GGAGGTTCAGTGTGCAGATGTGCACGTGCAATCTCAGTACTCAGGAGCCT
GACGCAGGACAATCACAAGTTCAAGGTCAGTAGGCTACGTGCAAAGTTGC
AGAGTAGCCCAAGCTCTTAAAACAAAGACGCAGAATGTGGAGGCAAGCCT
GAGGTGGAGCCTCTGCTGCCATTCCTAAGGGAGAGGAAAACTTGGGCAGG
CTAACACTGGTAAACTGGAACAGCCCCGAGGTTTCGGATATACAAGCGCT
GTTTTGCCGCCTGACATTTGCCTCTGGGTGTATTATTATAATAGAAAAAC
TGGCCCGAGTGCGAGATTTTATTTCCGATTTTTTTTTCCCTTCCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_m12.b1 MSMg01no087_m12.b1 CHROMAT_FILE:
MSMg01no087_m12.b1 PHD_FILE: MSMg01no087_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:02 2005
         (245 letters)



>mm_chr5_144423638_144424282
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccacatgcttttatttgctgagccatcttactggccttccaggtgctacttttcgtgcc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 gccacatgcttttatttgctgagccatcttactggccttccaggggctacttttcgtgcc 260

                                                                       
Query: 61  atctaatgtctcctataggttgccctttcacactgtaacacatgcataccctcccatata 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctaatgtctcctataagttgccctttcacactgtaacacatgcataccctcccatata 320

                                                                       
Query: 121 tacaatataaaatatagcacggccccagactcactttgtagaccaggctggcctcaaact 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaagataaaatatagcacggccccagactcactttgtagaccaggctggcctcaaact 380

                                                                       
Query: 181 cacactatctcttgcctctgctctaccgagtgctgagattaaaggtgtccacaccgtact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacactatctcttgcctctgctctaccgagtgctgagattaaaggtgtccacaccgtact 440

                
Query: 241 acgtg 245
           |||||
Sbjct: 441 acgtg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no087_m12.g1 MSMg01no087_m12.g1 CHROMAT_FILE:
MSMg01no087_m12.g1 PHD_FILE: MSMg01no087_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:02 2005
         (285 letters)



>mm_chr5_144525068_144525752
          Length = 685

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaatagtctccgagtttctttcatctatttcttgaggtgagttaagacttttggcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ccaatagtctccgagtttctttcatctatttcttgaggtgagttaagacttttggcttat 424

                                                                       
Query: 61  catctgtgtgtcctcatgccactttcctagacacctgtacttgctaaggatgggattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 catctgtgtgtcctcatgccactttcctagacacctgtacttgctaaggatgggattgaa 364

                                                                       
Query: 121 ggtgggatggtaatagccctgggaggggaccagaaggaaacttgggagatggttctactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggtgggatggtaatagccctgggaggggaccagaaggaaacttgggagatggttctactg 304

                                                                       
Query: 181 ccacagatcctacccagagaagggggtgccccatggctaggcagggccaagggtgagcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ccacagatcctacccagagaagggggtgccccatggctaggcagggccaagggtgagcac 244

                                                      
Query: 241 catgtctgtctgatgcagcacaacacaggttgatgggaggagg 283
           || ||||||||||||||| | ||||||||||||||||||||||
Sbjct: 243 caagtctgtctgatgcagtagaacacaggttgatgggaggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)