BAC Information

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BAC

Clone NameMSMg01-088C10
Chromosome5 (Build37)
Map Location 79,622,694 - 79,623,304
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088C10.T7 (MSMg01no088_c10.b1)MSMg01-088C10.TJ (MSMg01no088_c10.g1)
ACCAG306984AG306985
length757690
length of high quality
(start - end)
472 (104 - 575)608 (56 - 663)
definitionCHROMAT_FILE: MSMg01no088_c10.b1 PHD_FILE: MSMg01no088_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:31 2005CHROMAT_FILE: MSMg01no088_c10.g1 PHD_FILE: MSMg01no088_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATTATATTTTAAGAAAATTAAACTACATCACCACCCNNNCCCCCCTA
CCCCCCNGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACAACATACCCATCTCGAATAGTGGAGAAGCACTTAA
AGAAATGTTCAAAGTCCTTTATGATCAGGGAAATACAAATCAAAACTTTG
AGAATCTACCTTACACCAATCAGAATGGCTAAGATCAAAAACTCAGGTGA
CAGCACATGTTGGTGAGGATATGGAGAAAGAGGAACACTCTTCCATTGCT
GGTGGGATTGCAAACTGGTACAACCACTCTGTAAATCAGTCTGGAGGTTC
ATCAGAAAACTGGAAATAGATCTACCTGAAGACCCAGCTATACCATTCTT
GGGAATATACCCAAAATATAACCCTAACATACCACAGAGACATGTGTTCC
ACTGTGCTTATAGCAGCCTTGTTTGTAATAGGCAGAAGATGGAAACAACC
CAGATGTCCATAAATGAAGAATGGATACAGAAAATGTGATTCATTTACAC
AATGGAATACTACTCAGCTATTAAGAATGAGAACATCATGAGTTTTACAG
ACAAATGGATGGAACTAGAACATTTCATCTGGAGTGAGGTAACTCAGACC
CAAAATGACATACATGATATGCACTCACTAATACGTGGATCCTAGCAAAA
AGTACCGACTACTTATGGGTAAAACACACAGAACTTAAGTTTCATTAAGT
CAGAAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAATCCAAGGACAAATTGAGCAAAGTATACATCCATAGCCAACTTC
ATTATTTTTAATTTTTTAACATGTAACCATGTAAGAATATGTTAGACTAT
GTAGATTTGTACATGTAAGTATATGTGTATTGAGGCTAGAATGTTTGGAT
CTCCCTGGAGCTACAGGTTATTGTGAGAGACCTGATATGCATGTAGGCAG
TGGTGATTACTCTTAATATCCATGAGCCATTTCTTCAGACCCTAAACATA
GATAATTTATTCAATAAAACTGGAGCAGAAATTTTAAAAAGATAAAAAAA
AGAACTGAACACTCCCAACAGCAATAATTTAGACTCTCAAACAGAAATGA
CCAGAGAAATCCAAAAACACTTTAGTTGATATTTTAACAACACAAGAATC
AATGATGAATGTGAAAAACTTCTAGACTAGGGCAGTGAAATGAAAGACAC
ACCAAAACAACATCAGATCTTTATAATCAATTTTATAAGTCAATGGAAAC
TGGAAATATGCAATTGTAGGTGTAAACAGATAAACTAGTCTCCTACTAAG
CTACACATTTCAGATAAAGAAGTCTACTTCTCTAAGATCCTCACAACTTT
TATACCCACTCAACTTAATATTGTCCTTTCCCACACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_c10.g1 MSMg01no088_c10.g1 CHROMAT_FILE:
MSMg01no088_c10.g1 PHD_FILE: MSMg01no088_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:31 2005
         (608 letters)



>mm_chr5_79622494_79623504
          Length = 1011

 Score = 1151 bits (595), Expect = 0.0
 Identities = 606/611 (99%), Gaps = 3/611 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatccaaggacaaattgagcaaagtatacatccatagccaacttcattatttttaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aatccaaggacaaattgagcaaagtatacatccatagccaacttcattatttttaatttt 752

                                                                       
Query: 61  ttaacatgtaaccatgtaagaatatgttagactatgtagatttgtacatgtaagtatatg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 751 ttaacatgtaaccatgtaagaatatgttagactatgtagatatgtacatgtaagtatatg 692

                                                                       
Query: 121 tgtattgaggctagaatgtttggatctccctggagctacaggttattgtgagagacctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgtattgaggctagaatgtttggatctccctggagctacaggttattgtgagagacctga 632

                                                                       
Query: 181 tatgcatgtaggcagtggtgattactcttaatatccatgagccatttcttcagaccctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tatgcatgtaggcagtggtgattactcttaatatccatgagccatttcttcagaccctaa 572

                                                                       
Query: 241 acatagataatttattcaataaaactggagcagaaattttaaaaagat---aaaaaaaag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 571 acatagataatttattcaataaaactggagcagaaattttaaaaagataaaaaaaaaaag 512

                                                                       
Query: 298 aactgaacactcccaacagcaataatttagactctcaaacagaaatgaccagagaaatcc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aactgaacactcccaacagcaataatttagactctcaaacagaaatgaccagagaaatcc 452

                                                                       
Query: 358 aaaaacactttagttgatattttaacaacacaagaatcaatgatgaatgtgaaaaacttc 417
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 451 aaaaacactttagttgatattttaacaacacaagaatcaatgatgaacgtgaaaaacttc 392

                                                                       
Query: 418 tagactagggcagtgaaatgaaagacacaccaaaacaacatcagatctttataatcaatt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tagactagggcagtgaaatgaaagacacaccaaaacaacatcagatctttataatcaatt 332

                                                                       
Query: 478 ttataagtcaatggaaactggaaatatgcaattgtaggtgtaaacagataaactagtctc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttataagtcaatggaaactggaaatatgcaattgtaggtgtaaacagataaactagtctc 272

                                                                       
Query: 538 ctactaagctacacatttcagataaagaagtctacttctctaagatcctcacaactttta 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctactaagctacacatttcagataaagaagtctacttctctaagatcctcacaactttta 212

                      
Query: 598 tacccactcaa 608
           |||||||||||
Sbjct: 211 tacccactcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1011
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1001
Effective search space:   598598
Effective search space used:   598598
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)