BAC Information

Click to search

BAC

Clone NameMSMg01-088E17
Chromosome5 (Build37)
Map Location 127,043,094 - 127,043,401
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327, Tmem132c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088E17.T7 (MSMg01no088_e17.b1)MSMg01-088E17.TJ (MSMg01no088_e17.g1)
ACCAG307091AG307092
length693692
length of high quality
(start - end)
317 (45 - 361)230 (105 - 334)
definitionCHROMAT_FILE: MSMg01no088_e17.b1 PHD_FILE: MSMg01no088_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:43 2005CHROMAT_FILE: MSMg01no088_e17.g1 PHD_FILE: MSMg01no088_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGAGTCAGGCTTAACAGCAATCACCTTTTTTGCTGAGCCATCTC
AAAGGTCCAGACGTGTCCTCCCATAAATAAATGAATGTATCATTAGGCAT
CAGAACTGTTGTCACTGCAGAGAGTTGCTTTCTGACGGGTTGGGTCTGAA
GGGCTGAGAGCAATGGAATATCAGAGATGAACTTTTTCATGTTGCAACCA
CAGATGGGCACGGTTCATATGGAGAAAATAAATGTATTCTTTCTGTCTCT
GTCTCTCTCTGTGTATCTCTCTCTCTCTGTCTCTCTCTCTGTGTCTCTCT
GTCTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCCCCTCTT
CCAGCTTGTACCGACCAACCAACTGACTGTGATGTCTAAGAATGAATGTA
AAATTATCTCAGAAGTGCTAAGTTCACCTTACCAAGCTGTATGGACACTG
GATGTTGCTGCCTTCTTTCCCAGATTCTCTTTCCTCCTGCATATGGTTCA
TGACTAGAGCTGCTGTTCTGATCAACTCACCCATCCGTCCGAAGGGTATG
AGTATAAAATGTTCTGCCACATCGAATCACCTCCTGTGAATATATTAATG
ACGAATTCTCCCAACTATGCATGTACCTTAACTTGCACCTCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTGAGGTTTGACCTAATGCTGTTTGTATCCTAATGTTAATTTTGC
GCCCCCAAAACTGCTTACACCAGTGTCTGCATGAAGCTTCTGGGAACCTG
CCCAGTTGGTTGTGATTGGTAAATTAAGGGCCCCCAATGGAGGAGCTAGA
GAAAGTAGCCAAGGAGCTAAAGGAATCTGCAACCCTATAGGTGGAACAAC
ATTATGAACTAATCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTA
TCAAAAGATGGCCTAGTCGGCCATCACTGGGAAGAGAGTTTCTTTGGACT
TGCCCACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAATGCGG
TAGTGAATGATTAGGTCAGGTGTTCCTCCTTTTCTCTTCCTCCCTCCTCC
CTCTTTTTCTGTTTATCCCTCACTTCCCCCTCTTTTTTTTTCCTCTCTTC
TGTTTAACTTTTTTGATCCTTTCTACATTTTCCTTTTTCCTCTGTCCCTC
ACTCCGTTTTTTTCCCCCTCTTTTCCCTTCTATGTATTTCCCCCGAATTT
TCCTTTCCTCTCCTCCCTATTATATCCTCATTCACTCCACCTCACTTATC
TCTCTTTCATCTTACTTTCTGTCCACTTTTCTTTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_e17.b1 MSMg01no088_e17.b1 CHROMAT_FILE:
MSMg01no088_e17.b1 PHD_FILE: MSMg01no088_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:43 2005
         (317 letters)



>mm_chr5_127042890_127043606
          Length = 717

 Score =  549 bits (284), Expect = e-161
 Identities = 302/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggagtcaggcttaacagcaatcaccttttttgctgagccatctcaaaggtcc 64
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 205 gaattcaaggagtcaggcttaacagcaatcaccttttttgctgagtcatctcaaagctcc 264

                                                                       
Query: 65  agacgtgtcctcccataaataaatgaatgtatcattaggcatcagaactgttgtcactgc 124
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacgtgtcctaagataaataaatgaatgtatcattaggcatcagaactgttgtcactgc 324

                                                                       
Query: 125 agagagttgctttctgacgggttgggtctgaagggctgagagcaatggaatatcagagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagagttgctttctgacgggttgggtctgaagggctgagagcaatggaatatcagagat 384

                                                                       
Query: 185 gaactttttcatgttgcaaccacagatgggcacggttcatatggagaaaataaatgtatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaactttttcatgttgcaaccacagatgggcacggttcatatggagaaaataaatgtatt 444

                                                                       
Query: 245 ctttctgtctctgtctctctctgtgtatctctctctctctgtctctctctctgtgtctct 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttctgtctctgtctctctctgtttatctctctctctctgtctctctctctgtgtctct 504

                   
Query: 305 ctgtctct 312
           ||||||||
Sbjct: 505 ctgtctct 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)