Query= MSMg01no088_l18.b1 MSMg01no088_l18.b1 CHROMAT_FILE:
MSMg01no088_l18.b1 PHD_FILE: MSMg01no088_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:19 2005
(231 letters)
>mm_chr5_148710869_148711504
Length = 636
Score = 410 bits (212), Expect = e-119
Identities = 228/236 (96%), Gaps = 5/236 (2%)
Strand = Plus / Plus
Query: 1 caggatgcccccagaaggggctctgcctcatggtgggttttccattcggtctgggtttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggatgcccccagaaggggctctgcctcatggtgggttttccattcggtctgggtttga 260
Query: 61 atctactaa-----gtctctcctgatcattgtttgagcgacttacagagaacaacgaggc 115
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctactgatcattgtctctcctgatcattgtttgagcgacttacagagaacaacgaggc 320
Query: 116 tactgttccgagagagtgttttgtccttgaaggcactggtctagtctttaatggggttac 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgttccgagagagtgttttgtccttgaaggcactggtctagtctttaatggggttac 380
Query: 176 gtgagggagggactttaaggttagcaggctgagctgaattcacgtgtgtgtgtgtg 231
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gtgagggagggactttaaggttagcaggctgagctgaattcacctgtgtgtgtgtg 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 636
Length adjustment: 9
Effective length of query: 222
Effective length of database: 627
Effective search space: 139194
Effective search space used: 139194
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no088_l18.g1 MSMg01no088_l18.g1 CHROMAT_FILE:
MSMg01no088_l18.g1 PHD_FILE: MSMg01no088_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:19 2005
(100 letters)
>mm_chr5_148881171_148881670
Length = 500
Score = 186 bits (96), Expect = 4e-52
Identities = 99/100 (99%)
Strand = Plus / Minus
Query: 1 ccaactgagggaaagggacatttgcctcatgcagttagtgagtgtgtggaggcactgctg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 300 ccaactgagggaaagggacatttgcctcatgcagttagtgagcgtgtggaggcactgctg 241
Query: 61 gtgtgacaagcattcaagctggccctctgccacacacacc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtgtgacaagcattcaagctggccctctgccacacacacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space: 45264
Effective search space used: 45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
