BAC Information

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BAC

Clone NameMSMg01-089C22
Chromosome5 (Build37)
Map Location 9,453,749 - 9,454,041
singlet/doubletsinglet
Overlap gene9330182L06Rik
Upstream geneSlc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361
Downstream geneGrm3, LOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089C22.T7 (MSMg01no089_c22.b1)MSMg01-089C22.TJ (MSMg01no089_c22.g1)
ACCAG307747AG307748
length712707
length of high quality
(start - end)
294 (66 - 359)298 (56 - 353)
definitionCHROMAT_FILE: MSMg01no089_c22.b1 PHD_FILE: MSMg01no089_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:54 2005CHROMAT_FILE: MSMg01no089_c22.g1 PHD_FILE: MSMg01no089_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATAGTCCGAGGATCCGCGGAATTCATTGTT
TTTATTCCCTGAGAAGTTCTCCAGTGTATAATTTACCACATTTACTGTAT
CCATTCCTCTGCTGACCGACATCTGGGTTCTTTCCAGGTCCTGGCTATTA
TAAATAAGGCTGCTATGAACATAGTGTAGCATGTGTCCTTGTTATATGTT
GGAGGATATTTTGGGTATATGCCCAGGAGTGGTATAGCTAGGTCCTCAGG
TAATACTATAACCAATTTTCTGAGGAACGACCAGATTGATTTCCAGAGTG
TTTGTCCCAGCTTGCTTTCCCACCAACAATGGAGGAGTGTTACTCTTTCC
GGACATCTTTGTCCGCATCTTTTGCCACATGAGCTTTTGATCTTAGCCAT
TCTGAATAGTGTGAGGTAGAATCACAGGATTGTTTTGATTTGCATTTCCC
TGATGACTAAAGACGTTGAACATTTCTATAGGTGGCTCTTGGCCATTTGA
TATTCCTCAGCTGAAATTTCTTTGCTTATCGCTGTACCCCACTTTTAATA
CGGCTATCCGACTCCCTGCATTCTAAAATTTTGAGTTTCTTGTCCCCATG
CTATACTATTCCTCTATCCCATGTATTAATTGCTATACTTCCCTTTCCCA
CCTCTGCTGTTTGCCTTTTTTGTCCTATTAACAGTCATTCTTTGCTCTTA
CCCCCACTTTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTACCAAGGAGAAGTCCCTAATCACTCTAGTGTTTTGACACAGTGG
CAGCCTTATAAATGACATGAATATCTAGATTTTTTTCCTTCAAGTTTTTG
TGTTTTTGTCAGTTCCCTAGAAATTGACTTGCATTGTTAATCGTCTTCAA
ACTTTGCGTTGCTTTGAGCTTCCAAAGTTTGCTTTAGGACTTCAATTTTG
GAAATTACAAAACTAAGGCAGGGGAAGGAGGAAAACTGTCATTTTAAAGT
CCAGTTTGATTTAAAACCTGAGATATCTCCAGACGTTTTTGCAACTTTTT
TTATCTTCACCCCCCCCCCCCATGTTTCGTTTCAAAATTTAACAGACTTG
CTGTCCTCTCCATAAAAAAGAATAAAAACTTTGGGCGTTCCTTGGCAAGT
CTCTATTCTTGGAAAGAGTGAGTTGCGCCACTCAGGGCTACTTTTTGCTA
AACGATCAGACCATATGCTTACTTCAAAATTACAACTTGCAGCTCTATTG
TTATATCTTTTTGATTACGAATCTGCACTCTTATTCATTCTCAACCCTAT
AATTTATTATGAATCCCTTTCCTTTGACCCCAAATATGCCTAACCGTTAT
GTTATTTTCGCCGTGCGAAAAATTCTACTCCCCCGCCCTTTTTACTTTTT
ACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_c22.g1 MSMg01no089_c22.g1 CHROMAT_FILE:
MSMg01no089_c22.g1 PHD_FILE: MSMg01no089_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:54 2005
         (298 letters)



>mm_chr5_9453549_9454246
          Length = 698

 Score =  528 bits (273), Expect = e-154
 Identities = 288/293 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taccaaggagaagtccctaatcactctagtgttttgacacagtggcagccttataaatga 60
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 201 taccaaggagaagtccctaatcactgtagtgttttgacacagtggcagtcttataaatga 260

                                                                       
Query: 61  catgaatatctagatttttttccttcaagtttttgtgtttttgtcagttccctagaaatt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 catgaatatctagatttttttccttcaagtttttgtgcttttgtcagttccctagaaatt 320

                                                                       
Query: 121 gacttgcattgttaatcgtcttcaaactttgcgttgctttgagcttccaaagtttgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttgcattgttaatcgtcttcaaactttgcgttgctttgagcttccaaagtttgcttt 380

                                                                       
Query: 181 aggacttcaattttggaaattacaaaactaaggcaggggaaggaggaaaactgtcatttt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggacttcaactttggaaattacaaaactaaggcaggggaaggaggaaaactgtcatttt 440

                                                                
Query: 241 aaagtccagtttgatttaaaacctgagatatctccagacgtttttgcaacttt 293
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtccagtttgaattaaaacctgagatatctccagacgtttttgcaacttt 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)