BAC Information

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BAC

Clone NameMSMg01-089I12
Chromosome5 (Build37)
Map Location 146,003,206 - 146,003,525
singlet/doubletsinglet
Overlap geneZfp655
Upstream geneBri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116
Downstream geneLOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089I12.T7 (MSMg01no089_i12.b1)MSMg01-089I12.TJ (MSMg01no089_i12.g1)
ACCAG308007AG308008
length726699
length of high quality
(start - end)
335 (25 - 359)282 (74 - 355)
definitionCHROMAT_FILE: MSMg01no089_i12.b1 PHD_FILE: MSMg01no089_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:22 2005CHROMAT_FILE: MSMg01no089_i12.g1 PHD_FILE: MSMg01no089_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATACGGAGAGGATCCGCGGAATTCATGCAT
GGCTGTATACCTGTCTTCACAGAAGTTATCATTAGTACTATGGTAGCCAA
TGGTACAGTGTTGGCATCAAACCTTGTCGACGAGTATCAAATGGCATTCT
GAAAATGAAATGCAAGCCCCTGCTATATAATAAGTTAAAATATAGCAGCA
AATCAGTAATAAATGAATAAATTTAGCAAAATCCTGTAAGACACACAAGT
TTAATAAAGAACACCAAAACAGGGAATTATTTCTGGTTCTTTAGCACAGT
AAGAAAAATGGTTGAAACAATTTACAATATAATTCTAATTAATATTATTA
TTTTTTTACCCCCCCCCCGCCTGGTTGGTTGGTTGGTATATAAACTTTTC
CCTTCCCCCACTAAAAAAAAATATCTACGTTGGCCCGTTCTTCCCTTTCC
TCCTTTCCCATCTATTATCTCCCTCTCTTCCCCCTCTTCTTCCTTCTATC
CACTCCCTCTTTCTTTCCTCTCTTTTCCTTCTCCCTTCTTTTATTATCTT
TCCCCCCCCCTTTACCATTACCCCACTTCCTTTCTATCATTCCCCCTCTA
TCTTCTACCATTTTCTCCTTTCCTTATATTTGCTCACACTCTTACTTCCC
CTTTTCCTTCACCTCCTTTTTTCCCTTTTTTTCCTCCTCTTCTTTCTTCC
TTTTCCTTCCTTCCTCTCCTCCCCCG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTTTAGCCAGGGCTACACAGTTAAG
ATTGTGAAAAAGGATAAAACAATAAAATAAGCGGGATGTTGGTAATCCCA
GCACTCAAGAAGGGGAGACAGGAAGGGTGAATGTTTTAGGCTGTCCTGAG
CTACAAAGTGAGTGCCAATCAGCCAGGGCTACCCAGCAAGACAGCCTTGA
AAGAATGAAAATTAGTTAGAGCTGGCAACAGTTTAGAGGTCAAACTGTTA
AGAGAAGAATAAGTCATGATCCCAGGAAATGTGATACGGACAAGAAGACT
AACGGGATTATCTCCATCGCCCTGCACCCACAGATAGGTAAGGGGCTAGC
AATATGATTCAGCAGAGAGAGGCGCCTGCAGCGCAAGTGACCAGAGTTCG
ATCCCTGGGCTGTGCATGAAGGTGGAAAGGAAGACCCAGCTCTATACGTC
GTCCTCTGGGCTCCACATGTGCACCGTGGCACACACACTCACACGTGCAC
ATAGACAGCAATAACAGAGATCCAAGGACTGAGCATATGAACACCCCAGC
TTCAACAGCTGATAACGTTGCACTGCCCCACATATTATGCCCACCCAGCA
GAAGGAAAACCCCACGGTTCTCTTGCAAAATGTCTACCTGTTTACCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_i12.b1 MSMg01no089_i12.b1 CHROMAT_FILE:
MSMg01no089_i12.b1 PHD_FILE: MSMg01no089_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:22 2005
         (335 letters)



>mm_chr5_146003025_146003759
          Length = 735

 Score =  596 bits (308), Expect = e-175
 Identities = 317/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 15  gaattcatgcatggctgtatacctgtcttcacagaagttatcattagtactatggtagcc 74
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaattcatgcatggctggatacctgtcttcacagaagttatcattagtactatggtagcc 442

                                                                       
Query: 75  aatggtacagtgttggcatcaaaccttgtcgacgagtatcaaatggcattctgaaaatga 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggtacagtgttggcatcaaaccttgtcgacgagtatcaaatggcattctgaaaatga 382

                                                                       
Query: 135 aatgcaagcccctgctatataataagttaaaatatagcagcaaatcagtaataaatgaat 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgcaagcccctgctatataataagttaaaatatagcagcaaatcagtaataaatgaat 322

                                                                       
Query: 195 aaatttagcaaaatcctgtaagacacacaagtttaataaagaacaccaaaacagggaatt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatttagcaaaatcctgtaagacacacaagtttaataaagaacaccaaaacagggaatt 262

                                                                       
Query: 255 atttctggttctttagcacagtaagaaaaatggttgaaacaatttacaatataattctaa 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttctggttctttagcacagtaagaaaaatggttgaaacaatttacaatataattctaa 202

                               
Query: 315 ttaatattattattttttta 334
           |||||||||  |||||||||
Sbjct: 201 ttaatattaagattttttta 182


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)