BAC Information

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BAC

Clone NameMSMg01-089L11
Chromosome5 (Build37)
Map Location 16,481,885 - 16,482,189
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089L11.T7 (MSMg01no089_l11.b1)MSMg01-089L11.TJ (MSMg01no089_l11.g1)
ACCAG308141AG308142
length668675
length of high quality
(start - end)
305 (15 - 319)381 (55 - 435)
definitionCHROMAT_FILE: MSMg01no089_l11.b1 PHD_FILE: MSMg01no089_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:37 2005CHROMAT_FILE: MSMg01no089_l11.g1 PHD_FILE: MSMg01no089_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGATCCGCGGAATCACCTTTTACATCAAAATATAAATGTCCATAATTAT
GTACTATGGATTACTGCTAATTAGACAGCGCTGCTAACAACTTTCATAAA
AGATGAGAAAACCCACAGTGACACCTAGAAATGTCTTGTGTTTTTGTTAT
TCTCAATATACTCTGCCAGCTTTCTTCCTGCACCAGCTGCTATGCAACAT
TGTCAACCACATGCTCTTGGAGTGGCAATATGTCTTTAGGCCAGAGAGTA
GTAAAGGAGATATTATGTTTTAACACTTGTAATTTAATAGTTATATCTGA
TAAACTATTCTGTGAAAAACTATTGTTTCACCCACCACGAGTTTTTTAAA
TCACTGTATATCTTATTGGCGTTAACAAGCTGTAATAAAATATTAAGGGT
GGCATGAGGTGCCTCTCTTTCATTTCATTTATCATGAGTTCAGACTCATC
ACCCATGAAAGAAATATCTGTACCCATACACAGCAGTCAGGAGGGTAGGG
GCAGATAGTATGAACATAATTCAACTGGCTCAATCTTGAAGTGTTACAAA
TAAAATTGCAAAATAAACTTACTAGCTCCAAATATGTACCATATTGCCAT
TCACTAGCGCAGGTCTATGTAAAAAATAATTTGTCAGAATTTTAAACTCT
TAATCCAAAATTGGTCAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCAGCAAGACTAAGTACATCCTCTCCTGCTAGGCTTAACCAGACAG
TCCAGCTAGAGGAAGGAGGTCCAGTGGCAGACAATAAAGTCATAGACATC
TTCCACTCTGATTGTTAGAGGACCCACATGAAGAACAAGCTGTACACCTG
TTACAGGTGTGTGGGGAGCCTAGGTCCCTTCATGCTCTTTGGATTATGGT
TCAGTCTCTGTGAGTCCCTATGTGTCCAGGTTACTTGACTCTGTAGATCT
TATGGTGTCCTTGACCTCTCTGGCTCACACAGTCCTATCCCCCATTCTTT
TACAAAACTCCAGAAAATCAAATAACCCTATTAAAAAATGAGTTGTAGAG
CTAAACAAAGAATTCTCAATTGAGGAATACCAAATGGCTGAGAACCACCT
AAAAAAAATTTCAACATCCTTAATCATCAGGGAAATGCATACCAAAAGAA
CACTGAGATTCCACCTCACACCAATCAGAATGGCTAAGATAAAGAACTCA
GGTGACAGCAGATAATGCTGAGGATGTGGGAAAAGAGGAACACTCCTCCC
TTGCTGGTGGGATTGCATGCCTGTTCAACCACTCTGAAATTCAGTTTGTC
GTTTCCTCACAAAATGGGCCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_l11.b1 MSMg01no089_l11.b1 CHROMAT_FILE:
MSMg01no089_l11.b1 PHD_FILE: MSMg01no089_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:37 2005
         (305 letters)



>mm_chr5_16481685_16482389
          Length = 705

 Score =  536 bits (277), Expect = e-157
 Identities = 298/305 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccttttacatcaaaatataaatgtccataattatgtactatggattactgctaattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caccttttacatcaaaatataaatgtccataattatgtactatggattactgctaattag 446

                                                                       
Query: 61  acagcgctgctaacaactttcataaaagatgagaaaacccacagtgacacctagaaatgt 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 acagcgctgctaacaactttcataaaagatgagaaaacccacagtggcacctagaaatgt 386

                                                                       
Query: 121 cttgtgtttttgttattctcaatatactctgccagctttcttcctgcaccagctgctatg 180
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 cttgtgttattgttattctcaatatactctgccagctttcttcttgcaccagctgctatg 326

                                                                       
Query: 181 caacattgtcaaccacatgctcttggagtggcaatatgtctttaggccagagagtagtaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 caacattgtcaaccacatgctcttggagtggcaatatgtctttaggccagagagcagtaa 266

                                                                       
Query: 241 aggagatattatgttttaacacttgtaatttaatagttatatctgataaactattctgtg 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct: 265 aggagatattatgttttaacacttgaaatttaatagttatatctgataacctagtctgtg 206

                
Query: 301 aaaaa 305
           |||||
Sbjct: 205 aaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)