BAC Information

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BAC

Clone NameMSMg01-089M14
Chromosome5 (Build37)
Map Location 4,650,146 - 4,650,437
singlet/doubletsinglet
Overlap genenone
Upstream gene4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Downstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089M14.T7 (MSMg01no089_m14.b1)MSMg01-089M14.TJ (MSMg01no089_m14.g1)
ACCAG308193AG308194
length689681
length of high quality
(start - end)
314 (35 - 348)292 (69 - 360)
definitionCHROMAT_FILE: MSMg01no089_m14.b1 PHD_FILE: MSMg01no089_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:43 2005CHROMAT_FILE: MSMg01no089_m14.g1 PHD_FILE: MSMg01no089_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGCA
GGAACCTGGAAGTTAGAGCTGATACAGAGGTCATGTAGGAGGGCTGCTTT
CTGAAATGCTTTCTATGGCTTGCTCAGCTTGCATTCTGACATTACCTAGG
ACCATGAGCCCAGGGGCCCTACAACCCATGGTGAGCTTAGCCCTCCCACA
TTAATCATCAATCAAGAAAATGCACTGCGGGCTTGTTTTAAGCCAGTCTG
GTGGGAGCATTTCTTCAACTGAAGTTTCACCTTTCCTAACAAGTCTAACT
TGTTTCTAGTTGACATAAAACTAACCAGCACAGTTAGTCTTCTCCAAGGA
TTGTTATCTACCCCCCACCCCCATTATTTGTTTTTTCACTCTGTTATACA
GTGCTTTCATCCCTTTTTCTCTTATTAATTCCTGTCTTTATCTTTAGGTT
TTCCTTCTTTTTACTTCCTTTTAGCTCCTTTTGCTTGCCTTCCTACCCCT
TTGCTTTACACTGTTTCCGCTACCCTTGTTTACTACTATCACATCCCCAG
ACGTTATTCTCTCATACTATCGAATCCCCTGTCTATCCATATTCTCCTTC
CATATAAATTACCTCACTCTTGCGCCTTTTTCCCCCCCTTTCTCCGTTTT
TTCCCCGTTTATATCTCTTTCCATCTTACTCCCATCTCC
CATGATGTGNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTTCGGTTGTATATCATTTTAAAAGAGTTGA
CACACATGTCCTTTTGAGAGAAAATAATGAAAAATTTCAAAAGTGAAAGC
CAGTTCTGGCCTGCCAACTGTGATGACTGGTCACACAGAAGAGGGCTGTG
GAATTCTGCGGCCATTTGGGTTTTGTTAAGTTTGCTGAAACACTGTCAAG
TCTGATCGCTGCCACGTTCAACAGTTTAATGACTTTTGGATAAGCCTTCA
GAGGTAAATGGTTAAATCACCAAATGCTCCATAAAATAATTATGCAAACA
ATTTTCTGGCTAATTATCTCCCCTGAGCAGAAGCACACAGCTGCTGAGAT
ACATAATTGCTCTTTCTTCGGAGCTGGCTACTGTATTTATATAACTCCTT
TACTGATCTCAGTGTAGTTTGGTGGAGAGCATTTACATAATATCCCGTGA
AGTGAACGAGCTAAAGACACAGCTCTGGCCCCAGCTGCTAGATAGCAACA
GTGACTTACTTGATATATATATTTTTTAAGGCATTCAAGTTACAATCTTG
ACATCCATGTATATCTGTATGCCATACGTATATCCTTATGGGCTATATTT
ATATGTAGTTCCCCCCTTCCTATATTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_m14.g1 MSMg01no089_m14.g1 CHROMAT_FILE:
MSMg01no089_m14.g1 PHD_FILE: MSMg01no089_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:43 2005
         (292 letters)



>mm_chr5_4649946_4650637
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcggttgtatatcattttaaaagagttgacacacatgtccttttgagagaaaataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atttcggttgtatatcattttaaaagagttgacacacatgtccttttgagagaaaataat 433

                                                                       
Query: 61  gaaaaatttcaaaagtgaaagccagttctggcctgccaactgtgatgactggtcacacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 432 gaaaaatttcaaaagtgaaagccagttctggcctgccaactgtgatgactggttacacag 373

                                                                       
Query: 121 aagagggctgtggaattctgcggccatttgggttttgttaagtttgctgaaacactgtca 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagagggctgtggaattctgaggccatttgggttttgttaagtttgctgaaacactgtca 313

                                                                       
Query: 181 agtctgatcgctgccacgttcaacagtttaatgacttttggataagccttcagaggtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agtctgatcgctgccacgttcaacagtttaatgacttttggataagccttcagaggtaaa 253

                                                               
Query: 241 tggttaaatcaccaaatgctccataaaataattatgcaaacaattttctggc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tggttaaatcaccaaatgctccataaaataattatgcaaacaattttctggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)