Query= MSMg01no089_m16.b1 MSMg01no089_m16.b1 CHROMAT_FILE:
MSMg01no089_m16.b1 PHD_FILE: MSMg01no089_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:43 2005
(314 letters)
>mm_chr5_105552379_105553093
Length = 715
Score = 563 bits (291), Expect = e-165
Identities = 306/313 (97%), Gaps = 5/313 (1%)
Strand = Plus / Plus
Query: 5 gaattctattttgtacc---tcaaatatacagtcatagaaagtaaaagtgaggaggagag 61
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattttgta--aagtcaaatatacagtcatagaaagtaaaagtgaggaggagag 262
Query: 62 gagggactgtggacacacgtaggatacataagtctagagagataatgagtaacattaata 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gagggactgtggacacacgtaggatacataagtctagagagataatgagtaacattaata 322
Query: 122 tagaacttcatgaaactgtatgtatgtgttgtatatgtgtgtgttgtgtaaatatgcata 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tagaacttcatgaaactgtatgtatgtgttgtatatgtgtgtgttgtgtaaatatgcata 382
Query: 182 tctgcttgtgtgggggtgcatgtggaaagagtcattctccaccttattggcaaagggtct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctgcttgtgtgggggtgcatgtggaaagagtcattctccaccttattggcaaagggtct 442
Query: 242 ctcaggtgaagtggaactctctaatacagccagtgtgtttacccatcatgctccggagct 301
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 ctcaggtgaagtggaactctctaatacagccagtgtggctacccatcatgctccggagct 502
Query: 302 ctcctgtgtcttc 314
|||||||||||||
Sbjct: 503 ctcctgtgtcttc 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space: 215330
Effective search space used: 215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_m16.g1 MSMg01no089_m16.g1 CHROMAT_FILE:
MSMg01no089_m16.g1 PHD_FILE: MSMg01no089_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:43 2005
(287 letters)
>mm_chr5_105727029_105727715
Length = 687
Score = 524 bits (271), Expect = e-153
Identities = 283/287 (98%)
Strand = Plus / Minus
Query: 1 aggacaaacgtgagacaaggaaaaggtgacaggtcagcccctaagagaagcttcccgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aggacaaacgtgagacaaggaaaaggtgacaggtcagcccctaagagaagcttcccgagg 428
Query: 61 tggggtggactgtgaggtgcagtgcaccctgagggagtgtgggtctccttagagactgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tggggtggactgtgaggtgcagtgcaccctgagggagtgtgggtctccttagagactgtc 368
Query: 121 ctcactccctctgtgcttttctgtggtggcactttatggctttcactcctttcacattgg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 367 ctcactccctctgtgcttttctgtggtggcactttatggttttcactcctttcacattgg 308
Query: 181 gttctgtctctgatttcttaacagccttagcaggtgggtcattcttacaaatttccactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gttctgtctctgatttcttaacagccttagcaggtgggtcattcttacaaatttccactg 248
Query: 241 agctactcatttacattttattcctctgctttttctaatcacacacc 287
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 247 agctactcaaaaacattttattcctctgctttttctaatcacacacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
