BAC Information

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BAC

Clone NameMSMg01-090A03
Chromosome5 (Build37)
Map Location 60,717,733 - 60,795,505
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1
Downstream geneLOC100041498, LOC666597, EG666610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090A03.T7 (MSMg01no090_a03.b1)MSMg01-090A03.TJ (MSMg01no090_a03.g1)
ACCAG308354AG308355
length707705
length of high quality
(start - end)
391 (44 - 434)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no090_a03.b1 PHD_FILE: MSMg01no090_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:01 2005CHROMAT_FILE: MSMg01no090_a03.g1 PHD_FILE: MSMg01no090_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,795,117 - 60,795,505)(60,717,733 - 60,718,017)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCCTTGGAAATTGGAGGAACTGACCTGAGGCCAATCAACTGTGTC
AGTTTGAAATTTCTCACTGTGCTAGTAAACAGATGGAGTTTTAAGGTTAT
GGCCCTTCAAAGCATCTTGATAAGATAACTAAGTTTCGAAATCAGTATCT
TGTATTGGTATTAGAACATACACATATTTTTTCACTCTGAGGACAGTGAG
GGTTTTAAAATATACTCAAATACTGAAAAACTCACAAGTTAATGACTACA
TGTCATAATATTTTTGAGCTTCCTTTGCTATGTGGTTATGTGGTTTGGTA
GGTTTTTTTTCTTTTGCTGCTATTGATACAATACACAAATTTATAAACAG
GGTTTTTTTTGGAGGGGGGTCATTATTCTGGAAAGCATTGATGGAGCACA
TTTAATGATGGTTTTCTTACAGATACAGTCACAGGCTGGTATAACGAATC
CTATCATACAATCTGACAGTGTGCCTGATCCCCTCCACAACCATTTATTA
CCCAGTCCCCTCTACATTAAATATTAATCCCATTATTTCCATTACACTCA
TCCGCAAATCCCATTATCTCTGATCCCCTCTTGCTCTCTCAAATACTCAA
CATCCAATTTATTCCCAATACCCTTATAACTTATCTCCCCCTCCCCCTAT
CCCCACA
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCATGAGAATCTGCATGTGGTTAGAT
TAAGCCTGTTCACCATGTAATCTTTGCTTGGAGGTTTTTAAACTATCTAG
TGATTTAGAATATTAGACAAATGCTAGGCTGGTTTCCTTTCTCTATACTC
AGAATTATTCTGAAGCCTTGCATAAGGTCTACATTTTTCCTGTCAAAATT
GATCTGCTTTCTTAGATCAAATTGATGCATGGAAAATTGTCGAGTTTTCC
CCAAAACTTAATGTTTTATTTTTCAGAAAAATTCTTTATTAAGTAATCAT
AAATATGATTATAAACCTGTTCAAGTTAAAAAACCATACAGCAAATCAGT
CAATGGAAAAGTGATTAAAATGTTGTATGTAATTAATAACAGAAATTGAA
TTTGTATGCATAAGTCAACATTGCAAAAGATAGTCATTCAAATAAGACTA
AAGCTACTAAAATTCTTCTTCGACCGTCCTATAGATTCATTCTTTTCTTG
TTAAAAATGCTGACTAGAATAGGAAAATTGTAAAGATCCCAAAGATACCC
TTGAATGGAATGTTGTTTATATTTTTGGTTGTTACAAGAAGTTGTAAAGA
GGAGTCACAAACCTTAAAATGACTTATGATGTCTTGTTTACCTATATTAT
TAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_a03.b1 MSMg01no090_a03.b1 CHROMAT_FILE:
MSMg01no090_a03.b1 PHD_FILE: MSMg01no090_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:01 2005
         (391 letters)



>mm_chr5_60794913_60795705
          Length = 793

 Score =  721 bits (373), Expect = 0.0
 Identities = 385/389 (98%), Gaps = 2/389 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttccttgg-aaattggagg-aactgacctgaggccaatcaactgtgtcagttt 62
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 593 gaattctttccttggtaaattggaggaaactgacctgaggccaatcaactgtgtcagttt 534

                                                                       
Query: 63  gaaatttctcactgtgctagtaaacagatggagttttaaggttatggcccttcaaagcat 122
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 533 gaaatttctcactgtgctagtaaaccgatggagttttaaggttatggcccttcaaagcat 474

                                                                       
Query: 123 cttgataagataactaagtttcgaaatcagtatcttgtattggtattagaacatacacat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cttgataagataactaagtttcgaaatcagtatcttgtattggtattagaacatacacat 414

                                                                       
Query: 183 attttttcactctgaggacagtgagggttttaaaatatactcaaatactgaaaaactcac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 attttttcactctgaggacagtgagggttttaaaatatactcaaatactgaaaaactcac 354

                                                                       
Query: 243 aagttaatgactacatgtcataatatttttgagcttcctttgctatgtggttatgtggtt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aagttaatgactacatgtcataatatttttgagcttcctttgctatgtggttatgtggtt 294

                                                                       
Query: 303 tggtaggttttttttcttttgctgctattgatacaatacacaaatttataaacagggttt 362
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 293 tggtaggttttttttcttttgctgttattgatacaatacacaaatttataaacagggttt 234

                                        
Query: 363 tttttggaggggggtcattattctggaaa 391
           |||||||||||||||||||||||||||||
Sbjct: 233 tttttggaggggggtcattattctggaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 793
Length adjustment: 9
Effective length of query: 382
Effective length of database: 784
Effective search space:   299488
Effective search space used:   299488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no090_a03.g1 MSMg01no090_a03.g1 CHROMAT_FILE:
MSMg01no090_a03.g1 PHD_FILE: MSMg01no090_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:01 2005
         (285 letters)



>mm_chr5_60717533_60718217
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcatgagaatctgcatgtggttagattaagcctgttcaccatgtaatctttgcttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcatgagaatctgcatgtggttagattaagcctgttcaccatgtaatctttgcttgga 260

                                                                       
Query: 61  ggtttttaaactatctagtgatttagaatattagacaaatgctaggctggtttcctttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttttaaactatctagtgatttagaatattagacaaatgctaggctggtttcctttct 320

                                                                       
Query: 121 ctatactcagaattattctgaagccttgcataaggtctacatttttcctgtcaaaattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatactcagaattattctgaagccttgcataaggtctacatttttcctgtcaaaattga 380

                                                                       
Query: 181 tctgctttcttagatcaaattgatgcatggaaaattgtcgagttttccccaaaacttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgctttcttagatcaaattgatgcatggaaaattgtcgagttttccccaaaacttaat 440

                                                        
Query: 241 gttttatttttcagaaaaattctttattaagtaatcataaatatg 285
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttttatttttcagaaaaattctttattaagtaatcataaatatg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)