Query= MSMg01no090_a07.b1 MSMg01no090_a07.b1 CHROMAT_FILE:
MSMg01no090_a07.b1 PHD_FILE: MSMg01no090_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:02 2005
(553 letters)
>mm_chr5_134473741_134474693
Length = 953
Score = 654 bits (338), Expect = 0.0
Identities = 370/384 (96%), Gaps = 7/384 (1%)
Strand = Plus / Minus
Query: 5 gaattctctattatcattcttacggggaaactcattagaaccatcaagactggtaaggtt 64
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattctctaaaatgattcttacggggaaactcattagaaccatcaagactggtaaggtt 322
Query: 65 tggtgttatggggcagggttctctgatcaaaagagccaccatcttcattgggtcagctgt 124
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tggtgttatggagcagggttctctgatcaaaagagccaccatcttcactgggtcagctgt 262
Query: 125 tcctgcttgcaagaagccatccagatctcacccgatggctgttgatagtctgtagaacag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgcttgcaagaagccatccagatctcacccgatggctgttgatagtctgtagaacag 202
Query: 185 tggttctcaacctttcggttgtgatcccttgtgtgtgggggggcatcaaatgaccttttc 244
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 201 tggttctcaacctttcggttgtgatcccttg---gggggggggcatcaaatgaccttttc 145
Query: 245 ataggggtcacctaagaccattggaaaac----atttatattaagattaatgagttgcaa 300
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 144 ataggggtcacctaagaccattggaaaacacatatttatattaagattaatgagttgcaa 85
Query: 301 atatatataccttcactcacacacatgaagttatgcacaccctgacccttcagagagaca 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 84 atatatataccttcactcacacacatgaagttgtgcacaccctgacccttcagagagaca 25
Query: 361 gagagatattttggagtgttttgc 384
||||||||||||||||||||||||
Sbjct: 24 gagagatattttggagtgttttgc 1
Score = 136 bits (70), Expect = 6e-36
Identities = 82/86 (95%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 374 gagtg-ttttgccacatgcatgtctatcccgcacttccatacctggtacctacagaggtc 432
||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 788 gagtgtttttgccacatgaatgtctatcccacacttccatacctggtacctacagaggtc 847
Query: 433 agaagaaggtatcagatcccctaaaa 458
|||||||||| |||||||||||||||
Sbjct: 848 agaagaaggtttcagatcccctaaaa 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_a07.g1 MSMg01no090_a07.g1 CHROMAT_FILE:
MSMg01no090_a07.g1 PHD_FILE: MSMg01no090_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:02 2005
(285 letters)
>mm_chr5_134352909_134353593
Length = 685
Score = 542 bits (280), Expect = e-158
Identities = 283/284 (99%)
Strand = Plus / Plus
Query: 1 cacattgcctctgaagctaaggcaacccccccaccccagtccctgggagatgctattaag 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 cacattgcctctgaagctaaggcaacacccccaccccagtccctgggagatgctattaag 260
Query: 61 atgcaacgaataaagcatagcaagggcttctgccccattaccccaaatacatttgatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcaacgaataaagcatagcaagggcttctgccccattaccccaaatacatttgatctg 320
Query: 121 tctggtgtggcactcataacaggtctccctgcatctgtcagatatctcctttcatagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggtgtggcactcataacaggtctccctgcatctgtcagatatctcctttcatagcct 380
Query: 181 caacaagaaagctggcagtgatgccatctagggatgtaggagaaagttcattttttccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacaagaaagctggcagtgatgccatctagggatgtaggagaaagttcattttttccac 440
Query: 241 tgattaaataaataaatagggggaaagtgtccctgaggatctga 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattaaataaataaatagggggaaagtgtccctgaggatctga 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
