BAC Information

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BAC

Clone NameMSMg01-090A07
Chromosome5 (Build37)
Map Location 134,353,109 - 134,474,121
singlet/doubletdoublet
Overlap geneLOC100039750
Upstream geneLOC100039731, LOC666038
Downstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090A07.T7 (MSMg01no090_a07.b1)MSMg01-090A07.TJ (MSMg01no090_a07.g1)
ACCAG308362AG308363
length688698
length of high quality
(start - end)
553 (36 - 588)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no090_a07.b1 PHD_FILE: MSMg01no090_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:02 2005CHROMAT_FILE: MSMg01no090_a07.g1 PHD_FILE: MSMg01no090_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,473,741 - 134,474,121)(134,353,109 - 134,353,392)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTAT
TATCATTCTTACGGGGAAACTCATTAGAACCATCAAGACTGGTAAGGTTT
GGTGTTATGGGGCAGGGTTCTCTGATCAAAAGAGCCACCATCTTCATTGG
GTCAGCTGTTCCTGCTTGCAAGAAGCCATCCAGATCTCACCCGATGGCTG
TTGATAGTCTGTAGAACAGTGGTTCTCAACCTTTCGGTTGTGATCCCTTG
TGTGTGGGGGGGCATCAAATGACCTTTTCATAGGGGTCACCTAAGACCAT
TGGAAAACATTTATATTAAGATTAATGAGTTGCAAATATATATACCTTCA
CTCACACACATGAAGTTATGCACACCCTGACCCTTCAGAGAGACAGAGAG
ATATTTTGGAGTGTTTTGCCACATGCATGTCTATCCCGCACTTCCATACC
TGGTACCTACAGAGGTCAGAAGAAGGTATCAGATCCCCTAAAACTACAGT
TATGAAGTAGCAATGAAAATAAATATGCTTGGGGGTCATCACAACATGAG
GAACTGCATTAATGGGTTGCAGCATTAGGAAGGTTGACAAGGGTGGCTAT
AAAGGCTATAGCTATACCTTCTATAGGTATACACGGCCTGTTCTCTTCTA
TACCCAAGGTTATTGATACAGGGCGCGCGCTGCGTCAT
GAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACATTGCCTCTGAAGCTAAGGCAACCC
CCCCACCCCAGTCCCTGGGAGATGCTATTAAGATGCAACGAATAAAGCAT
AGCAAGGGCTTCTGCCCCATTACCCCAAATACATTTGATCTGTCTGGTGT
GGCACTCATAACAGGTCTCCCTGCATCTGTCAGATATCTCCTTTCATAGC
CTCAACAAGAAAGCTGGCAGTGATGCCATCTAGGGATGTAGGAGAAAGTT
CATTTTTTCCACTGATTAAATAAATAAATAGGGGGAAAGTGTCCCTGAGG
ATCTGATAGAGCCCTGCCCCCACCCACCTATGCTACTTGGGAAATTGAGG
ACCCCTCCCCTTCGGATTCTTAGTCTTCTTAATTAAAGAATTTAAGAATA
GATTCAAACAGAAGCTTGAGGGTGGTTTATTAGAGCCTAAAGGAAACCAT
CAGGGCAGGCAAGCTGCAAACCTCAGAGCTGCCCAGAGGAAGGGAGTAGA
GAAGGAGAAGGGAAAGGCTGTGCCATGAGATGGGACAGAGGTCAGCCACA
GAGCAACTGACAGCCACATGGCTGGTGAAGGAGCTCTTAAAGAAAGAGTA
AGGACATACAGAGAGATAGGGAATTTTAAAGCATATTTAGGTTCTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_a07.b1 MSMg01no090_a07.b1 CHROMAT_FILE:
MSMg01no090_a07.b1 PHD_FILE: MSMg01no090_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:02 2005
         (553 letters)



>mm_chr5_134473741_134474693
          Length = 953

 Score =  654 bits (338), Expect = 0.0
 Identities = 370/384 (96%), Gaps = 7/384 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctattatcattcttacggggaaactcattagaaccatcaagactggtaaggtt 64
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattctctaaaatgattcttacggggaaactcattagaaccatcaagactggtaaggtt 322

                                                                       
Query: 65  tggtgttatggggcagggttctctgatcaaaagagccaccatcttcattgggtcagctgt 124
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tggtgttatggagcagggttctctgatcaaaagagccaccatcttcactgggtcagctgt 262

                                                                       
Query: 125 tcctgcttgcaagaagccatccagatctcacccgatggctgttgatagtctgtagaacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgcttgcaagaagccatccagatctcacccgatggctgttgatagtctgtagaacag 202

                                                                       
Query: 185 tggttctcaacctttcggttgtgatcccttgtgtgtgggggggcatcaaatgaccttttc 244
           |||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||
Sbjct: 201 tggttctcaacctttcggttgtgatcccttg---gggggggggcatcaaatgaccttttc 145

                                                                       
Query: 245 ataggggtcacctaagaccattggaaaac----atttatattaagattaatgagttgcaa 300
           |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||
Sbjct: 144 ataggggtcacctaagaccattggaaaacacatatttatattaagattaatgagttgcaa 85

                                                                       
Query: 301 atatatataccttcactcacacacatgaagttatgcacaccctgacccttcagagagaca 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 84  atatatataccttcactcacacacatgaagttgtgcacaccctgacccttcagagagaca 25

                                   
Query: 361 gagagatattttggagtgttttgc 384
           ||||||||||||||||||||||||
Sbjct: 24  gagagatattttggagtgttttgc 1



 Score =  136 bits (70), Expect = 6e-36
 Identities = 82/86 (95%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 374 gagtg-ttttgccacatgcatgtctatcccgcacttccatacctggtacctacagaggtc 432
           ||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 788 gagtgtttttgccacatgaatgtctatcccacacttccatacctggtacctacagaggtc 847

                                     
Query: 433 agaagaaggtatcagatcccctaaaa 458
           |||||||||| |||||||||||||||
Sbjct: 848 agaagaaggtttcagatcccctaaaa 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no090_a07.g1 MSMg01no090_a07.g1 CHROMAT_FILE:
MSMg01no090_a07.g1 PHD_FILE: MSMg01no090_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:02 2005
         (285 letters)



>mm_chr5_134352909_134353593
          Length = 685

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacattgcctctgaagctaaggcaacccccccaccccagtccctgggagatgctattaag 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 cacattgcctctgaagctaaggcaacacccccaccccagtccctgggagatgctattaag 260

                                                                       
Query: 61  atgcaacgaataaagcatagcaagggcttctgccccattaccccaaatacatttgatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcaacgaataaagcatagcaagggcttctgccccattaccccaaatacatttgatctg 320

                                                                       
Query: 121 tctggtgtggcactcataacaggtctccctgcatctgtcagatatctcctttcatagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggtgtggcactcataacaggtctccctgcatctgtcagatatctcctttcatagcct 380

                                                                       
Query: 181 caacaagaaagctggcagtgatgccatctagggatgtaggagaaagttcattttttccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacaagaaagctggcagtgatgccatctagggatgtaggagaaagttcattttttccac 440

                                                       
Query: 241 tgattaaataaataaatagggggaaagtgtccctgaggatctga 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattaaataaataaatagggggaaagtgtccctgaggatctga 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)