Query= MSMg01no090_f16.b1 MSMg01no090_f16.b1 CHROMAT_FILE:
MSMg01no090_f16.b1 PHD_FILE: MSMg01no090_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:29 2005
(318 letters)
>mm_chr5_134023498_134024218
Length = 721
Score = 520 bits (269), Expect = e-152
Identities = 301/313 (96%), Gaps = 5/313 (1%)
Strand = Plus / Minus
Query: 10 attcagcaaactttctgggaattttaggcagctgacctacagttgagccatacctcagtg 69
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 attcagcaaactttctggaaattttaggcagctgacctacagttgagccatacctcagtg 581
Query: 70 tcttactggatgccatctgggcaagtgctctaccactgagctgcatcttcattcccacag 129
|||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 580 tcttactggatggtatctaggcaagtgctctaccactgagctgcatcttcagtcccacag 521
Query: 130 tttctatatata-ggaaatttatttattacaaatccattcccctttcctgccacctaaag 188
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 520 tttctacatatagggaaa-ttatttattacaaatccattcccctttcctgccacctatag 462
Query: 189 acacacccatcaatcatcaagtagatggaatattctaactgaacaggaga---cctaatt 245
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 461 acacacccatcaatcatcaagtagatggaatattctaactgaacaggagacctcctaatt 402
Query: 246 atcagtcagcctgtgtccccatggaacccctacaatgttaaactatgttggcaatgttct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atcagtcagcctgtgtccccatggaacccctacaatgttaaactatgttggcaatgttct 342
Query: 306 gttcacagtgtaa 318
|||||||||||||
Sbjct: 341 gttcacagtgtaa 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 721
Length adjustment: 9
Effective length of query: 309
Effective length of database: 712
Effective search space: 220008
Effective search space used: 220008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_f16.g1 MSMg01no090_f16.g1 CHROMAT_FILE:
MSMg01no090_f16.g1 PHD_FILE: MSMg01no090_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:29 2005
(295 letters)
>mm_chr5_133845883_133846577
Length = 695
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 1 attacctctaaatgtctgtgacagaatgcttctatcatgcattaggcatcaagcaggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacctctaaatgtctgtgacagaatgcttctatcatgcattaggcatcaagcaggaag 260
Query: 61 acaatatccgtcatgtagggtcatgtaggagaggaacatggaaataagtgtttcttagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatatccgtcatgtagggtcatgtaggagaggaacatggaaataagtgtttcttagtc 320
Query: 121 ttgttttctgtttctatgataaaatactctgacaaatgcaacttaagggggaaggggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttttctgtttctatgataaaatactctgacaaatgcaacttaagggggaaggggttt 380
Query: 181 atttggctatacaggctgtaaccctgtatacccagaacatggtagaaatagactcactga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttggctatacaggctgtaaccctgtatacccagaacatggtagaaatagactcactga 440
Query: 241 tggatattttaactatctgaaacacaaaaacttatatctcagtta-ttttt 290
||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tggatatttaaactatctgaaacacaaaaacttatatctcagttacttttt 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
