BAC Information

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BAC

Clone NameMSMg01-090N03
Chromosome5 (Build37)
Map Location 134,351,959 - 134,352,190
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731, LOC666038
Downstream geneLOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090N03.T7 (MSMg01no090_n03.b1)MSMg01-090N03.TJ (MSMg01no090_n03.g1)
ACCAG308943AG308944
length733738
length of high quality
(start - end)
177 (44 - 220)232 (74 - 305)
definitionCHROMAT_FILE: MSMg01no090_n03.b1 PHD_FILE: MSMg01no090_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:06 2005CHROMAT_FILE: MSMg01no090_n03.g1 PHD_FILE: MSMg01no090_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATAAACTTTCCTCTAGACAACTTCAGTCTGTCACTGACTACCTATC
TGGGGTGAATACACCTTTGGTCATATCTTCCTAGGAGAAGTCTCACAACA
CTGTCTTCTTCACCATGTGCAAAATTCTATATCCACTTATTCTTCTCAGG
TATAAGATCTGTTGTTGTCCAAGGGGCACTCAGGAGTGTTTCTTCTTGCT
GGTTATGAGGTTGTAGAGGATTCTGTCTCTTTATGTGGCCTGCCCTTTAT
ATCTTATGTATTGTTACTATTTTTTTTCATGACATATAGGTATATATTTG
TATTATTTATCTTTTTGCTTCTCACTCCCCACAATAGCTTTGCTTCCCGC
ACTCACAAAGGAACTGACCTTTAACACCTCCTAAGTTATTCCCCGAGCGC
TCTGTCCCCCCCTGCATTTGCCCCTCCCTGCCTCCATTGTCTCCTCTCAA
TTCATCTTATTACTATCTATATTTAAAATTTTAGTCACTTTGCTATTTCA
TACTCTCTTTGTATTAATTTTCTTTTATCATATTTTTTTTTTTAAATATT
TTCTTCTTTTATTAATTCTCTTATCTTTATAAAAAATTTTTATTTTCTTT
ATTATTATTACCTTCTATATAATTCTTTACTTTATGTACTCTTCACTATC
TTTCTTCCTCACTTTTATATTCCTGTACTTATC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGTTGAAAACCTAGCCAATTCAGCA
CAAAACATAAATCAAAACCTGATCTTCCTTGTGCTCAAGTTTCATTATAT
TTTTTATCTCTTTAGCTCAAAAGAAATCGGTTCTATATCACTTTTAAAAA
TATACCGACTCAGTTAAATGTAATTTTCTCTAAAGCCAATTGCTTAATTA
GACAATAATATCAGAGAAATTGACCATTATAATCTGGTTACCGACTTTTC
AGATGGCCTGTTACCATTTATATTCTTTGCAGTTGGTTTTTTTTTAAAGC
ATGAAAAAAATTTATTGACCCCACCCCCCCCCGCCATCTTAATAGCCTAA
TATCTTTTTAATTCCCCAATTATTTAAAATCATAATTTGGCGTCAGGGAG
GGTACTCATATTACTCTTGCCGAATGGTCTTTATTTTTGTTTTCTGTTCT
AATCGATTTATGTTAGCGAAGACATCTAAGTATGCAACGGATTTCCTCCG
AAATAGTAAGATGTAACATTGTGTCCTGTGTCCAGTAAGTACCTTGTATT
TCCTCAATTAACTCATAAATTGGACGTATTACATATGATAAACAATTAAT
GATACGAGGACTATAAGTAATATAGAATATAACCAACTTACTTTAGATGC
AACACTCTTTTACTAATTATGTACCCTATTAATACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_n03.g1 MSMg01no090_n03.g1 CHROMAT_FILE:
MSMg01no090_n03.g1 PHD_FILE: MSMg01no090_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:06 2005
         (232 letters)



>mm_chr5_134351759_134352390
          Length = 632

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgttgaaaacctagccaattcagcacaaaacataaatcaaaacctgatcttccttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catgttgaaaacctagccaattcagcacaaaacataaatcaaaacctgatcttccttgtg 373

                                                                       
Query: 61  ctcaagtttcattatattttttatctctttagctcaaaagaaatcggttctatatcactt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 372 ctcaagtttcattatattttttatctctttagctcaaaagaaatcggttctacatcactt 313

                                                                       
Query: 121 ttaaaaatataccgactcagttaaatgtaattttctctaaagccaattgcttaattagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttaaaaatataccgactcagttaaatgtaattttctctaaagccaattgcttaattagac 253

                                                               
Query: 181 aataatatcagagaaattgaccattataatctggttaccgacttttcagatg 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aataatatcagagaaattgaccattataatctggttaccgacttttcagatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)