Query= MSMg01no091_d15.b1 MSMg01no091_d15.b1 CHROMAT_FILE:
MSMg01no091_d15.b1 PHD_FILE: MSMg01no091_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:39 2005
(512 letters)
>mm_chr5_140319264_140320175
Length = 912
Score = 874 bits (452), Expect = 0.0
Identities = 491/512 (95%), Gaps = 14/512 (2%)
Strand = Plus / Minus
Query: 1 caaggacctggaaacactggcccagcccccaaccactggtaatagtggaagtaaggagaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 767 caaggacctggaaacactggcccagcccccaaccactggtaatagtggaagt------aa 714
Query: 61 agcagggctgagaaagcaggaggagaaagctaggaaaagccaaagaaagcacgtggccca 120
| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 713 a--------gagaaagcaggagaagaaagccaggaaaagccaaagaaagcacgtggccca 662
Query: 121 gtcatgggagatgggcaggaagctgttgaggcttaagggctcaggctctagacctgctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtcatgggagatgggcaggaagctgttgaggcttaagggctcaggctctagacctgctac 602
Query: 181 acctgagacgctgcgacgcctgggcctgtatgtatggggatctcaatacccaaaggccac 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 601 acctgagacgctgcgacgcctgggcctgtatgtatgggaatctcaatacccaaaggccac 542
Query: 241 ctatcatgctaggcgacactcctgctgaagtgcctgcctactcctctgaggaacactagc 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 541 ctatcatgctaggcgacactcctgctgaagtgcctgccttctcctctgaggaacactagc 482
Query: 301 tggcaagctccaggccatgcgcgtagtaagaagctcacagccatcactctctgcttcttg 360
||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct: 481 tggcaagctccaggccatgggcatagtaagaagctcacagccattactctctgcttcttg 422
Query: 361 agcctggagccatgcatccatccctagctctctaagtctggagctatgagtctccagatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agcctggagccatgcatccatccctagctctctaagtctggagctatgagtctccagatc 362
Query: 421 tgtcaggcagcacatggcccttggccttcaagggcccaggactgacctctatcctacata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtcaggcagcacatggcccttggccttcaagggcccaggactgacctctatcctacata 302
Query: 481 agcttacccctgattacctgtgatttctaatt 512
||||||||||||||||||||||||||||||||
Sbjct: 301 agcttacccctgattacctgtgatttctaatt 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no091_d15.g1 MSMg01no091_d15.g1 CHROMAT_FILE:
MSMg01no091_d15.g1 PHD_FILE: MSMg01no091_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:40 2005
(219 letters)
>mm_chr5_140144039_140144657
Length = 619
Score = 377 bits (195), Expect = e-109
Identities = 213/219 (97%), Gaps = 3/219 (1%)
Strand = Plus / Plus
Query: 1 gaattcacagcctcgggcgtcctcaggtcccagacccagctaagcctcctcctttgtcct 60
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 202 gaattcacagcctcgggcgtcctcagatcccagacccagctaagccacctcctttgtcct 261
Query: 61 cgcctaggcagatcatgccacatccccattccacagatggggaaactgaattagggcata 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 262 cgcctaggcagatcatgccacatccc-attccacagatggggaaactgaattagggcaca 320
Query: 121 tctagccttgtataagtttcgccccttgccttgctcaaccaaaa-cccagattccccctt 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 321 tctagccttgtataagtttcgccccttgccttgctcaaccaaaaacccagattcccc-tt 379
Query: 180 tctctgagcctctccgccctgcccggtgtgtttgttcca 218
|||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctctgagcctctccgccctgcccggtgtgtttgttcca 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space: 128100
Effective search space used: 128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
