BAC Information

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BAC

Clone NameMSMg01-091F19
Chromosome5 (Build37)
Map Location 59,234,728 - 59,235,093
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091F19.T7 (MSMg01no091_f19.b1)MSMg01-091F19.TJ (MSMg01no091_f19.g1)
ACCAG309333AG309334
length709720
length of high quality
(start - end)
341 (67 - 407)383 (75 - 457)
definitionCHROMAT_FILE: MSMg01no091_f19.b1 PHD_FILE: MSMg01no091_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:51 2005CHROMAT_FILE: MSMg01no091_f19.g1 PHD_FILE: MSMg01no091_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACATACGAATTTAAATGGCTAAGAAACACTTAAAGAAATGTT
CAACATTAGCCATTAAAAAATGCAAATCAAAACAACTTTGACATTCCATA
TCACACCTGACAGAATGGCTAAAATCAAAAACCTAAGTGACATCTTATTT
TGGCAAGGATATAGAACAAGGGTATTACTCCTCCAATGCTGGTGAGAGTG
CAAATTTGTAGAGTCACTTTGGAAATCAATATGGCAGTTCTCCAGAAATT
GGGAATTGGTATCCCCACAAAAGAGCTATACTAACCTCCATTGTATAACC
AAAGGAAACTAGATCATATAATAATGAAATTGGCTCAACTATGCTTCTAG
AAGCAGAAACAGGAAACAATTTAGACATCCCTCAACCAGAGGATAGATAA
ACCAAATGTATATTTATACATAGATATTTAAAAAGTGACATCATGAAATT
TGCAGGCCAATGGCTGTAACAAGAACAGAAAATCATCCTGAGCGAGGTAA
CCCAGACTGAAAAAGACAAACATGATGTGTACTCAATTGTAACTGGGTAT
GAGTTGTAAATTAACACATAACCACACTACAGTCCACAGATCATGATTAT
CTTATAGAGGAAAGACCTTTATTGTCCTGGTGGGAAAACATGCCGTCATT
CATATACAA
TCAATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCATGCTCATTAGAATGACCTCCA
CCAAACACACACACACACACACACACACACACACACAAATATTTATTAGT
GATCATGACTTCTAGTAAAACCTACAATTATATGACCCTTGTGTAGTAGT
ATAACTACGTGAAAAAATTCAAAGCATAACAATTGAATTTTTTTCTCTTC
ACTACCAGATACAGGAATCAGAGAAATAAATATACTCTTATTGATTATTC
ATTATGATATGACATTATATATATATTGTACATTTGTTATCATAATATTT
ATCTCAATAAATATTAAATTAAAAACAACAATGTTGACATCAGAGAAAAT
TTGACTTTTGCAACCAGCTATTCACATATAAGTGATTAACATAATTCTGT
TATTAACATCAAAGTATTTTCCTTATTTATGAGTGATTTTCTTTTAGGAA
CAATAAAAGAATCACAAAACACAAGTAATCTTGAGGATTAAGTATTCACC
AAATGATTGACTAGATTCCACAGCTTTATCCATGATGGCAAATGCTCAAA
TTACCTGAATCAATCATTAAATATTCATAATTCAGACAGAAACTGCTACA
AATTGAGTTATATTCTATTGCCCAGTAAAATGAGAATATTTTGTAATTCA
GTGATTCTAAGGCATACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_f19.g1 MSMg01no091_f19.g1 CHROMAT_FILE:
MSMg01no091_f19.g1 PHD_FILE: MSMg01no091_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:51 2005
         (383 letters)



>mm_chr5_59234465_59235247
          Length = 783

 Score =  621 bits (321), Expect = 0.0
 Identities = 360/383 (93%), Gaps = 18/383 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatgctcattagaatgacctccaccaaacacacacacacacacacacacacacacac 60
           ||||||||||||||||||||||||||||||                ||||||||||||||
Sbjct: 629 attcatgctcattagaatgacctccaccaa----------------acacacacacacac 586

                                                                       
Query: 61  acaaatatttattagtgatcatgacttctagtaaaacctacaattatatgacccttgtgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 585 acaaatatttattagtgatcatgacttctagtaaaacctacaattatatgacccttgtat 526

                                                                       
Query: 121 agtagtataactacgtgaaaaaattcaaagcataacaattgaatttttttctcttcacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agtagtataactacgtgaaaaaattcaaagcataacaattgaatttttttctcttcacta 466

                                                                       
Query: 181 ccagatacaggaatcagagaaataaatatact-cttattgattattcattatgatatgac 239
            ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 465 gcagatacaggaatcagagaaataaatata-tacttattgattattcattatgatatgac 407

                                                                       
Query: 240 attatatatatattgtacatttgttatcataatatttatctcaataaatattaaattaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 attatatatatattgtacatttgttatcataatatttatctcaataaatattaaattaaa 347

                                                                       
Query: 300 aacaacaatgttgacatcagagaaaatttgacttttgcaaccagctattcacatataagt 359
           ||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||
Sbjct: 346 aacaacaatgttgacatcagagaaaatttgacttttgcaaaaagttattcacatataagt 287

                                  
Query: 360 gattaacataattctgttattaa 382
           |||||||||||||||||||||||
Sbjct: 286 gattaacataattctgttattaa 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)