BAC Information

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BAC

Clone NameMSMg01-091I19
Chromosome5 (Build37)
Map Location 82,831,277 - 82,831,674
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091I19.T7 (MSMg01no091_i19.b1)MSMg01-091I19.TJ (MSMg01no091_i19.g1)
ACCAG309470AG309471
length630684
length of high quality
(start - end)
403 (41 - 443)408 (128 - 535)
definitionCHROMAT_FILE: MSMg01no091_i19.b1 PHD_FILE: MSMg01no091_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:06 2005CHROMAT_FILE: MSMg01no091_i19.g1 PHD_FILE: MSMg01no091_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAAT
TCCATAAATGATGCAGAAATCCCAGAGTAGAGCCAAATAATGTTTGTTCT
ATCTGGAGAGAGGATGGTAATATTCCATTAATTATTTATCCTCCTTAAGT
ATTTTTAATTTGATCAGAAACTATCAATGCATCAATGTGTTTTCTGTCTG
CAATTAAGGCCATTTCAGTACATCCTTCACTGATTATTGAATATCTAGTT
GTTTTCCAGTTTTACTGCACAATTACACATGTAAACATCCACAGGTGTTT
TCATGAAAATCTAAGTGTAAGAGTTACAACATGTATGTTGGAACTTGAGC
ATAAAATTCCTCAAGAGTCACTGGCTTTATTTTTCTGAGTTTTGTCAAGT
CTGAGATATGCAGGAAACTATGGCTATTTTGATACTTCAGTTCATATTTC
TGTTTTTAATGACTGATAGAGCATAGGTTATTTGTATTTGCCAAGGAATT
ATTAATTAGGGAAGACATAAGATTGTATTTTCTAGGTAGAATATGAAAAG
GAAGTCCGCACTAAAGCTTATCTCTCTTTCCTCGGGACCCTGAAGACTGT
CCTTAATTCCTTCAATCTAATATTAGTAAC
ACGATGATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATAAAACTACTAAGCTAATAGATAA
AATGTAAACAGGATGGGCCTTGTCCAGATTCATGTAGGAACTGTTTTGGT
TGCCTCAGTCTTGAGACACCTATGTGCATTTGTCTTAGTTGATTCAGAGG
GCATTGTTCTCCTGATATTTTTTCATCCTCTCTGACTCCTACAAGATTCG
AACCTTCTCTTCTGTGGTATTCCCTGAGCTCAAAGTACAGGGAGTGGGGA
CTTTATAGATTTGGACTGTCTCACTAAACAATGTCTGGCTGTGGGTGTCT
GCGTCTGCTGCCATCTGCTGAGAGAGAAAGGTTTGCTGAGGATGACTGGA
TCTTTGAGTATACGGGAATAACATTAGGGGTTCTTTATTGGTAGTAAAAG
AATACAAGGATGCTGCAACCCTATAGGTGGAACAACAATATGAACTAACC
AGTACCTCCCGGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGC
CTCGTCGGCCATCAGTGGAAAGAGAGGCCCAATGATTGTGCCAACTTTTA
TATGCCTCAGTAACAGGGGAATGCCAGGGCCCAAAAATGGGTACCGGCTG
GTTGGGGGAAGTTTTATACCTCCTTTTCCATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_i19.b1 MSMg01no091_i19.b1 CHROMAT_FILE:
MSMg01no091_i19.b1 PHD_FILE: MSMg01no091_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:06 2005
         (403 letters)



>mm_chr5_82831071_82831874
          Length = 804

 Score =  700 bits (362), Expect = 0.0
 Identities = 389/398 (97%), Gaps = 1/398 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccataaatgatgcaga-aatcccagagtagagccaaataatgtttgttctatctg 65
           ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 207 gaattccataaatgatggagataatcccagagtagatccaaataatgtttgttctatctg 266

                                                                       
Query: 66  gagagaggatggtaatattccattaattatttatcctccttaagtatttttaatttgatc 125
           |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 267 gagagaggatggcaatattccattaattatttagcctccttaagtatttttaatttgatc 326

                                                                       
Query: 126 agaaactatcaatgcatcaatgtgttttctgtctgcaattaaggccatttcagtacatcc 185
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 327 agaaactatcaatgcatcaatgtgttttctgtctgcaattaaggctatttcagtacatcc 386

                                                                       
Query: 186 ttcactgattattgaatatctagttgttttccagttttactgcacaattacacatgtaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 387 ttcactgattattgaatatctagttgttttccagttttactgcacaattacgcatggaaa 446

                                                                       
Query: 246 catccacaggtgttttcatgaaaatctaagtgtaagagttacaacatgtatgttggaact 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catccacaggtgttttcatgaaaatctaagtgtaagagttacaacatgtatgttggaact 506

                                                                       
Query: 306 tgagcataaaattcctcaagagtcactggctttatttttctgagttttgtcaagtctgag 365
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 507 tgagcataaaattcctcaagagtcactggctttatttttctgagtttcgtcaagtctgag 566

                                                 
Query: 366 atatgcaggaaactatggctattttgatacttcagttc 403
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atatgcaggaaactatggctattttgatacttcagttc 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 804
Length adjustment: 9
Effective length of query: 394
Effective length of database: 795
Effective search space:   313230
Effective search space used:   313230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)