BAC Information

Click to search

BAC

Clone NameMSMg01-091I24
Chromosome5 (Build37)
Map Location 38,445,220 - 38,445,506
singlet/doubletsinglet
Overlap geneStx18
Upstream geneJakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
Downstream geneNsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091I24.T7 (MSMg01no091_i24.b1)MSMg01-091I24.TJ (MSMg01no091_i24.g1)
ACCAG309479AG309480
length721718
length of high quality
(start - end)
191 (122 - 312)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no091_i24.b1 PHD_FILE: MSMg01no091_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:07 2005CHROMAT_FILE: MSMg01no091_i24.g1 PHD_FILE: MSMg01no091_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCGCTAAACGACTCCTANATCGTGCAGGGGGGCGGAANTCNCATTTCT
TCCCAACAAACAGGNGCTGNTTACTGTCCAAACGCCTACCGGCATCGGGG
TGTCTTTTTCGCCCCAAAGACTTCTCTGTCTCCTTGTCTGAGCCTTTGTT
AGGATCACTCCAGATGCTCTATTCACAACACTAGAGGCTTATTTTAGCTT
CCAAAGTCTGCTTTTCTCGTTCCCTTAATCATTTTTAGGCTGCCTCTATA
TTTTCAAGCATAGTAAAAAGTCCACTCCTTGGTACCAATTTTCTTCATGT
GTCTATTTTGTTCGATAGTTATGAAATACCTGAGACAGGCTAACTTTAAA
GATAATATGTCCACTTAGCCAACAGTTTTGCGGGTTCAAGGATAAGGCGC
TGGTACCAATCATCCTAAATTGGTTTAGGACCCCTTGGCTACACATGAGG
CGGAGACACATGTGGGAAAACATCCGTAGCAGTATACAGAGAGCCAGGGA
GCACAGGATAGACTAAACTATTGCTATCACCAGTCGGGGACACCACTGGT
GAATAAACACAGCCTCCATACTGAGCTTTGATGACCAACGCTTTTGCCTC
CAAGGCCCTATAGATATCTCTTGCTCCGGTCCTAAGATGGCACCGCCTGC
CTATTTTGTGTTTTCAATCTCTATTCATTTACAATTAACCCAATTCTGTC
TGTTGATCCCCTTCCGCTTGA
CATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCATGGACTTCTAGCCTAAGGGGAACTTAAAG
TAAACAAATACTTTCGACACTCTGGCAGGAAATCAGAGTTGTCTCAGGTA
CTCCCAAGGCGCCTGTAAGTGATTAGGCAAAGTCACAGGGGGGAACTTTT
GGGGTTCAGAGGACAAGAGATTACTTCTGGGTGAAATTGAAAGGCAATTT
TGGGGAAGAGGTGATGAGTAGGTCTTAAAGGCTCATACATTCTCCATGTG
TGCGAATGAAGAGAGGGTAGACCAGCTAGGAGTGAACAGCAGACTCCAAG
GTGCACTCTTTGATGGCAGCGCCCACTTAACTTAACCAGGACGAGGATGA
GGAGGCTGTGCATGCGCTGTGTATACCATGGACCCTGGGATCCACTCTGC
CTGGGCCCCCTCCCTTTGGCCAGGATGCTGATTTTAGTGGCTAGCGTGGC
ACGGTACCCTTGCGTCTGTTGAGAGGCAGCACGAGGAATTTCTGGGGGAA
TGGTACACAGGTGAATGACCGGATATGGCTTGTCGCTTGGATACCCGCTT
TGATTTCACAGCACATGATTCTGTTTGGTATCTGCCAAGCACTTAGAGTC
TTCCTTATGGAGATAGAGGATCTGGGATGCCGCAGTGGGTTTAGTTATCG
GGGTGATATGGGCCGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_i24.g1 MSMg01no091_i24.g1 CHROMAT_FILE:
MSMg01no091_i24.g1 PHD_FILE: MSMg01no091_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:07 2005
         (287 letters)



>mm_chr5_38445020_38445706
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatggacttctagcctaaggggaacttaaagtaaacaaatactttcgacactctggcag 60
           |||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||
Sbjct: 201 tcatggacttctagcctaaggggaacttaaagtaaacaaatacccacgagactctggcag 260

                                                                       
Query: 61  gaaatcagagttgtctcaggtactcccaaggcgcctgtaagtgattaggcaaagtcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatcagagttgtctcaggtactcccaaggcgcctgtaagtgattaggcaaagtcacag 320

                                                                       
Query: 121 gggggaacttttggggttcagaggacaagagattacttctgggtgaaattgaaaggcaat 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggggaacttttggggttcaggggacaagagattacttctgggtgaaattgaaaggcaat 380

                                                                       
Query: 181 tttggggaagaggtgatgagtaggtcttaaaggctcatacattctccatgtgtgcgaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggggaagaggtgatgagtaggtcttaaaggctcatacattctccatgtgtgcgaatg 440

                                                          
Query: 241 aagagagggtagaccagctaggagtgaacagcagactccaaggtgca 287
           ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagaggggagaccagctaggagtgaacagcagactccaaggtgca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)