BAC Information

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BAC

Clone NameMSMg01-091M01
Chromosome5 (Build37)
Map Location 103,876,144 - 103,876,516
singlet/doubletsinglet
Overlap genePtpn13
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091M01.T7 (MSMg01no091_m01.b1)MSMg01-091M01.TJ (MSMg01no091_m01.g1)
ACCAG309620AG309621
length686682
length of high quality
(start - end)
524 (46 - 569)373 (128 - 500)
definitionCHROMAT_FILE: MSMg01no091_m01.b1 PHD_FILE: MSMg01no091_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:22 2005CHROMAT_FILE: MSMg01no091_m01.g1 PHD_FILE: MSMg01no091_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATAACTAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGCTCCTCTAGGACCATGTCTACCTGCAGGCTGACATGCTTCC
CACCACGATGACAATGGACTAAACTTCTTAAACTATAAGCCAGGCCCAAA
TTAAACGTTTTCTTCCATAAGGGTTGCCGTGATCATGGAGTGTCTTCACA
GCAATAAAAATCCTAAGACACTAGGCTTGTGGCAACAGCTCAGCTGGTGG
TGTAGGGCTTGCCACATATGCTTGAAGGATTGAGTTCAATGCTTTGCACC
CACACAAAAAGCCAAGTATGGTGGCAGGCATGTATAAATAACCCCAGAAC
TGAAAAAGAAGGGGCAGGCTATTCCCTGGGATTCACTGGCTAGCTAGCCA
AGTCAAATCTGCCAGCCCCAAGTCTCAGTGAAAGACCTTGTGTCAATAAG
TGAAGTGAATGGCTTTGAAGAATCAGGCCCAGAGTTGACCTCTGGCCTCC
ATGTATACACTAGTACACACACATGTACCCATGAACAGCACTCACATACA
AATTAAAAACAAGAACCTAAGGTTAAGGCTCATTCATTCTGAGAATCCAC
TCAGAATCTCTTAATTGGATGTAGATTAATTTAAAAAAAATACCCCCCCA
ATACAGTAGAATTGTGTAAAGTGGGCATTGCTCAGA
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCAGTTAAAACAGAAAAGCAGCC
TTGAGACTGGCATGCTGTTGTGCCCGCCCAGGCTGGCTTAAACTCCTGGG
CTTCTTGCCTCAGCCTCTGAGTATTATGGTCATGAGCATGTGGCACCATG
CCTGGCTGAGATGTGTCTTTTAGTGGTAAAGCTTCTTCCATTTGGAAACA
GCAGTGTGTCCCATGTACTCCTGATGGGCCGCAGAACGGAGCTGCGCAGG
TGTGGTCAGTTCGGTACAGTTTCTTACACCACAGAGAAACTAGAGCTGTT
GTCCTAGAGAAGTAGAGAAGGCAGAAAGCCATGGGCAGGAACCCTCAGAG
GTTCTCCTGCCTTCCTGGGAGCCTGGCTTGCGGGATCCCTAACAGGTATT
TCTAGACCTAGCTGTTTATCTTGAGCACAAGTCTGCCCCTGATCCCAGGG
CTGATGGGGAGCACAAAATTCCTATGTGCTATTAATAAAGAACATTTCAT
CTTTCTTAAACCTAAGTCTACCCCTTTATCAAAGCCTTGACTTGCAAGTG
CTTTGCAACCTTATGATGCCTTCCTAGACCTGGTACCCTTCCCTTCGCAC
TAAGGTTTTTATTATAAGCAATTCCTACCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_m01.g1 MSMg01no091_m01.g1 CHROMAT_FILE:
MSMg01no091_m01.g1 PHD_FILE: MSMg01no091_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:22 2005
         (373 letters)



>mm_chr5_103875864_103876636
          Length = 773

 Score =  690 bits (357), Expect = 0.0
 Identities = 369/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggctggcttaaactcctgggcttcttgcctcagcctctgagtattatggtcatgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ccaggctggcttaaactcctgggcttcttgcctcagcctctgagtattatggtcatgagc 594

                                                                       
Query: 61  atgtggcaccatgcctggctgagatgtgtcttttagtggtaaagcttcttccatttggaa 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atgtggtaccatgcctggctgagatgtgtcttttagtggtaaagcttcttccatttggaa 534

                                                                       
Query: 121 acagcagtgtgtcccatgtactcctgatgggccgcagaacggagctgcgcaggtgtggtc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 533 acagcagtgtgtcccatgtactcctgacgggccgcagaacggagctgcgcaggtgtggtc 474

                                                                       
Query: 181 agttcggtacagtttcttacaccacagagaaactagagctgttgtcctagagaagtagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agttcggtacagtttcttacaccacagagaaactagagctgttgtcctagagaagtagag 414

                                                                       
Query: 241 aaggcagaaagccatgggcaggaaccctcagaggttctcctgccttcctgggagcctggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aaggcagaaagccatgggcaggaaccctcagaggttctcctgccttcctgggagcctggc 354

                                                                       
Query: 301 ttgcgggatccctaacaggtatttctagacctagctgtttatcttgagcacaagtctgcc 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 353 ttgcgggatccctaacaggtatttcaagacctagctgtttatcttgagcacaagtctacc 294

                        
Query: 361 cctgatcccaggg 373
           |||||||||||||
Sbjct: 293 cctgatcccaggg 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)