Query= MSMg01no092_i20.b1 MSMg01no092_i20.b1 CHROMAT_FILE:
MSMg01no092_i20.b1 PHD_FILE: MSMg01no092_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:26 2005
(507 letters)
>mm_chr5_10665085_10665992
Length = 908
Score = 669 bits (346), Expect = 0.0
Identities = 367/374 (98%), Gaps = 3/374 (0%)
Strand = Plus / Plus
Query: 1 gaataaaattaagtgtgttcaaaaagaagacatctggattgtagccctgtcatgtatgat 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 gaataaaattaagtgtgttcaaaaagaagacatctggattgtagccctggcatgtatgat 260
Query: 61 gtttaaagcatttt-tntcaataactttt-cacaactaacttaaataattttcttacttc 118
|||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gtttaaagcattttgt-tcaataactttttcacaactaacttaaataattttcttacttc 319
Query: 119 tgcaaaaaaatctaaatttcatttaatgtttcattttaatatatatatttcactattgtt 178
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgcaaaaaaatctaaattttatttaatgtttcattttaatatatatatttcactattgtt 379
Query: 179 gcatttattttattctgtcagcttgactttcagtttttttaatattctgacatgagatct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcatttattttattctgtcagcttgactttcagtttttttaatattctgacatgagatct 439
Query: 239 tctttgtcattaattatccatcatttaaggtgaatgttttctaactgatggataattata 298
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctttgtgattaattatccatcatttaaggtgaatgttttctaactgatggataattata 499
Query: 299 attttaacatggaaaactctgagatttgcaggaattatattttctattcttttttaccca 358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 attttaacatggaaaactctgagattttcaggaattatattttctattcttttttaccca 559
Query: 359 gttaatgggatttt 372
||||||||||||||
Sbjct: 560 gttaatgggatttt 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space: 446306
Effective search space used: 446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_i20.g1 MSMg01no092_i20.g1 CHROMAT_FILE:
MSMg01no092_i20.g1 PHD_FILE: MSMg01no092_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:27 2005
(422 letters)
>mm_chr5_10806916_10807737
Length = 822
Score = 717 bits (371), Expect = 0.0
Identities = 410/429 (95%), Gaps = 12/429 (2%)
Strand = Plus / Minus
Query: 1 tttatttcagataattgacagatttctgaaaatactacagaattcagtatcactatactg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 434 tttatttcagataattgacagatttctgaaaatactacagaattcagtagcactatactg 375
Query: 61 tgagggaatgtgttcttacaccaggttattgatttctgtctaatcacctgttatacttac 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 374 tgagggaatgtgttcttacaccaggttattgatttctgtctaatcacctgctatacttac 315
Query: 121 ttctgtatttatccaaatagttaataaatcaaatcaaataggatgtttaaattttgccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttctgtatttatccaaatagttaataaatcaaatcaaataggatgtttaaattttgccaa 255
Query: 181 ttatagagaaaaacttgccctcttttattttaaattgttgaatctag----------ttt 230
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 254 ttatagagaaaaacttgccctcttttattttaaattgttgaatctagttttttttttttt 195
Query: 231 ttttatataaattctcttgtgctaaactgctagttgataagttatcagtttttggtag-t 289
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct: 194 ttttttataaattctcttgtgctaaaatgctagttgataagttatcagtttttggcagct 135
Query: 290 taatataagttaaaaataatattggatctttacaagcccacccagaatttttatttgttt 349
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 taatacaagttaaaaataatattggatctttacaagcccacccagaatttttatttgttt 75
Query: 350 tcagggaaaatggttctttttttttccccaatgaacatcccaggatatctaatgactaat 409
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 74 tcagggaaaatggttc-ttttttttccccaatgaacaacccaggatatctaatgactaat 16
Query: 410 aaattccca 418
|||||||||
Sbjct: 15 aaattccca 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
