BAC Information

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BAC

Clone NameMSMg01-092L14
Chromosome5 (Build37)
Map Location 15,381,715 - 15,382,190
singlet/doubletsinglet
Overlap gene4930519H02Rik
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Downstream geneLOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092L14.T7 (MSMg01no092_l14.b1)MSMg01-092L14.TJ (MSMg01no092_l14.g1)
ACCAG310343AG310344
length767664
length of high quality
(start - end)
493 (127 - 619)506 (55 - 560)
definitionCHROMAT_FILE: MSMg01no092_l14.b1 PHD_FILE: MSMg01no092_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:41 2005CHROMAT_FILE: MSMg01no092_l14.g1 PHD_FILE: MSMg01no092_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCCCNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCNNNNN
NCNNNNNCNNNNNNCCCCCACTTTTTTTTACTCTATAAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTACTTTGCGAGAA
AAACAGAATTTTAGAAATTGCCAAAAACAATTTAATTACAAAAAAAAAAA
GAAACAAAACATAGAATATGACCATAAATGAGTTCCACGTTAGGTAGAGG
AACAAGGAGAAGTGGAATTTTGGAAGAGAGAGCAACTAAAAAGAATCCAG
CTCATTAACAAAGATGCTACAAACCATGACACAAGCTCATTTACTCTTCT
TATAATGAGTGAGGAATGATATATAAAACAATGTCTAAACATTTGCCATT
AGAGGAAACTGAACAGTAGGAACACTATGTCCAGAAAGTAAGTGCCAAGC
CCTGTTCAGACAACCACTTCATCTCAAGTCAGTGAGCGCAGCCTCCTATG
CTCACTCATGTAAATAATCTTGGATTAAGATTTTATAATTACCAATCCTG
CAACTCCTATACCTACACAATTCAAGGTGTTTTAAATACTAATTGGATAA
TATCATAATTGGTCAATTAGTCAATTAGATAAATACAAACACCAAAAATT
ACACAACTTCACTAAATAGGACCAGATGTACCAAGTACTTTCATTTCCCA
TGAAGTTTAAGTAAAATTTCCCTCCGAAATATTTTAGTACTAGCATCTTT
TACAATTTAAGTGAAGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATGACACCATGGATGCAGTATGGCAGTGATTACATCATCAAGTGTG
CGTCCATGGGGTAAGTGACATTATCCACACACAAAAGATCATCATTGCCT
TGTATACCCCCTAGGTGGCTATGGCTTTACTATGTAGCCCTGGCTGCCTG
GAACTTACAGAGATCCATCTCTGGCTGTGAATTCCAAGTCTGCAGCAGGG
GACAGAACACCTGAATAAGGAAGATGGTCTCAAGAGTCACTACTTGCAAA
TCAATTTTTATTCATAAGAAATAGAATTTTTAAAAAGTAGGTTTTAAAAG
TTCAATTAATATAGAGATAAAGGCAAAAACAAACAATGAAATACAAGAAC
AAGAACATATAACTTCTAAATAACATAACAATAACTCTAAGAACAAAAAT
AAAAACTTAAACCAAAACTCTAAAGGAAAATTATTGTTCAGCTGCTTTCG
CTTTCTGCACTTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGA
CACTAGGTATCAGTGCAGCCGCCTCAGTTCTCTGCCAAGAGACGTTGTCT
GAAGAGAAAAGGGAACACCGCCCTGAATCAGCCATGGCTTCCTAGGTAAG
GCCGATTCACCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_l14.b1 MSMg01no092_l14.b1 CHROMAT_FILE:
MSMg01no092_l14.b1 PHD_FILE: MSMg01no092_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:41 2005
         (493 letters)



>mm_chr5_15381496_15382390
          Length = 895

 Score =  909 bits (470), Expect = 0.0
 Identities = 474/476 (99%), Gaps = 2/476 (0%)
 Strand = Plus / Minus

                                                                       
Query: 20  gagaaaaacagaattttagaaattgccaaaaacaatttaattac--aaaaaaaaaaagaa 77
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 695 gagaaaaacagaattttagaaattgccaaaaacaatttaattacaaaaaaaaaaaaagaa 636

                                                                       
Query: 78  acaaaacatagaatatgaccataaatgagttccacgttaggtagaggaacaaggagaagt 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 acaaaacatagaatatgaccataaatgagttccacgttaggtagaggaacaaggagaagt 576

                                                                       
Query: 138 ggaattttggaagagagagcaactaaaaagaatccagctcattaacaaagatgctacaaa 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ggaattttggaagagagagcaactaaaaagaatccagctcattaacaaagatgctacaaa 516

                                                                       
Query: 198 ccatgacacaagctcatttactcttcttataatgagtgaggaatgatatataaaacaatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ccatgacacaagctcatttactcttcttataatgagtgaggaatgatatataaaacaatg 456

                                                                       
Query: 258 tctaaacatttgccattagaggaaactgaacagtaggaacactatgtccagaaagtaagt 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tctaaacatttgccattagaggaaactgaacagtaggaacactatgtccagaaagtaagt 396

                                                                       
Query: 318 gccaagccctgttcagacaaccacttcatctcaagtcagtgagcgcagcctcctatgctc 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gccaagccctgttcagacaaccacttcatctcaagtcagtgagcgcagcctcctatgctc 336

                                                                       
Query: 378 actcatgtaaataatcttggattaagattttataattaccaatcctgcaactcctatacc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 actcatgtaaataatcttggattaagattttataattaccaatcctgcaactcctatacc 276

                                                                   
Query: 438 tacacaattcaaggtgttttaaatactaattggataatatcataattggtcaatta 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tacacaattcaaggtgttttaaatactaattggataatatcataattggtcaatta 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 895
Length adjustment: 10
Effective length of query: 483
Effective length of database: 885
Effective search space:   427455
Effective search space used:   427455
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)